Table 2 Accessories gene associated with biofilm formation
From: Genetic determinants of Biofilm formation of Helicobacter pylori using whole-genome sequencing
Gene | Annotation | Present in low biofilm (n) | Present in high biofilm (n) | Proportion of gene present in biofilm level | Naïve P value | FDR | |
|---|---|---|---|---|---|---|---|
High | Low | ||||||
btuB_1 | Vitamin B12 transporter BtuB | 10 | 24 | 0.909 | 0.533 | 0.036 | 1 |
group_1745 | Phosphoethanolamine transferase CptA | 9 | 21 | 0.818 | 0.467 | 0.047 | 1 |
group_485 | DUF1524 domain-containing protein | 8 | 45 | 0.727 | 1 | 0.006 | 1 |
group_824 | G domain-containing protein | 8 | 45 | 0.727 | 1 | 0.006 | 1 |
group_243 | hypothetical protein | 8 | 16 | 0.727 | 0.356 | 0.041 | 1 |
group_2979 | VirB4 homolog (VirB4) | 4 | 4 | 0.364 | 0.89 | 0.04 | 1 |
group_2579 | DNA primase | 3 | 2 | 0.273 | 0.44 | 0.047 | 1 |
group_2913 | IS200/IS605 family transposase IS606 | 3 | 1 | 0.273 | 0.22 | 0.021 | 1 |
group_3500 | ddrB-ParB domain-containing protein of phage | 3 | 1 | 0.273 | 0.22 | 0.021 | 1 |
group_3675 | Putative tail assembly protein of phage | 3 | 2 | 0.273 | 0.44 | 0.047 | 1 |
group_363 | hypothetical protein | 3 | 2 | 0.273 | 0.44 | 0.047 | 1 |
dnaE2_1 | Error-prone DNA polymerase | 2 | 0 | 0.182 | 0 | 0.036 | 1 |
group_4028 | Uncharacterized protein (Helicobacter phage FrB41M) | 2 | 0 | 0.182 | 0 | 0.036 | 1 |
group_2993 | hypothetical protein | 2 | 0 | 0.182 | 0 | 0.036 | 1 |
group_290 | conserved hypothetical ATP-binding protein | 0 | 16 | 0 | 0.356 | 0.023 | 1 |