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Table 1 Alpha diversity estimates in fecal microbiome of Cynomys ludovicianus across sampling sites and habitat

From: Fine-scale spatial variation shape fecal microbiome diversity and composition in black-tailed prairie dogs (Cynomys ludovicianus)

Sampling sites

Samples

Total reads

Reads after filtering

Observed OTU’s

Shannon

Faith’s PD

Lubbock

n = 12

69,949 ± 5780

51,434 ± 4548

1481.1 ± 116.8

6.49 ± 0.15

11.79 ± 0.462

Hockley

n = 14

72,097 ± 6392

51,945 ± 4690

1321.7 ± 54.2

6.33 ± 0.06

10.95 ± 0.295

Bailey

n = 16

92,082 ± 19,018

68,099 ± 13,872

1244.6 ± 47.5

6.21 ± 0.04

10.86 ± 0.197

Randall

n = 15

80,300 ± 6162

57,487 ± 4504

1678.1 ± 49.4

6.59 ± 0.09

11.91 ± 0.241

Dallam

n = 13

67,783 ± 5025

49,508 ± 3698

1670.0 ± 54.0

6.71 ± 0.08

12.37 ± 0.271

Habitat

Rural

n = 28

74,488 ± 4147

53,783 ± 3007

1678.9 ± 35.7

6.64 ± 0.06

12.12 ± 0.182

Urban

n = 42

79,094 ± 7735

57,953 ± 5681

1337.8 ± 43.5

6.33 ± 0.05

11.16 ± 0.186