Table 1 General features of the Rhodopseudomonas genomes analyzed in this study
Proposed namea | Genome assembly ID | Size | GC | CDS | Plasmid | Strain isolated from/Isolation information | Referenceb |
|---|---|---|---|---|---|---|---|
Rhodopseudomonas faecalis JCM 11668T |  GCA_003217325.1 | 4.07 | 64.20 | 3,681 | ― | Anaerobic digester treating chicken manure, China | [39] |
Rhodopseudomonas faecalis JSC-3b |  GCA_000504425.1 | 4.07 | 64.20 | NA c | ― | Freshwater canal adjacent to a vegetable field, China | [40] |
Rhodopseudomonas faecalis PSBS |  GCA_002895035.1 | 3.95 | 64.10 | NA c | ― | Swine sewage wastewater, China | [41] |
Rhodopseudomonas palustris 4810 |  GCA_014145305.1 | 5.35 | 63.40 | 4,961 | ― | Contamination in cultures of Thiospirillum jenense DSM 216T | [42] |
Rhodopseudomonas palustris DSM 123T |  GCA_900110435.1 | 5.27 | 64.60 | 4,747 | ― | Surface water or mud | [43] |
Rhodopseudomonas rhenobacensis DSM 12706 |  GCA_014203125.1 | 5.18 | 65.60 | 4,612 | ― | Sediment of eutrophic pond, Rheinbach, Germany | [44] |
Rhodopseudomonas pentothenatexigens JA575T |  GCA_900218015.1 | 5.38 | 66.00 | 4,822 | ― | Paddy soils, India | [45] |
Rhodopseudomonas rutila CGA009 | Â GCA_000195775.1 | 5.47 | 64.99 | 4,913 | 1 | -- | [3] |
Rhodopseudomonas rutila DSM 126 |  GCA_002937155.1 | 5.39 | 65.00 | 4,895 | ― | Freshwater pond, Germany: near Zeulenroda | [46] |
Rhodopseudomonas rutila ELI 1980 | Â GCA_002026345.1 | 5.65 | 65.09 | 5,090 | 1 | Freshwater pond, Suffolk County, NY, USA. | [47] |
Rhodopseudomonas rutila PS3 |  GCA_003031265.1 | 5.27 | 65.30 | 4,780 | ― | Paddy field, Taipei City, Taiwan | [48] |
Rhodopseudomonas rutila R1T |  GCA_003547145.1 | 5.31 | 64.90 | 4,803 | ― | Rice fields, Japan | [49] |
Rhodopseudomonas rutila TIE-1 |  GCA_000020445.1 | 5.74 | 64.90 | 5,227 | ― | iron-rich mat, Woods Hole, Massachusetts, USA | [50] |
Rhodopseudomonas rutila YSC3 |  GCA_003031245.1 | 5.37 | 65.20 | 4,871 | ― | Paddy field, Yilan County, Taiwan | [48] |
Rhodopseudomonas sp. CGMCC 1.2180 |  GCA_013415845.1 | 5.32 | 65.00 | 4,792 | ― | China |  |
Rhodopseudomonas sp. 42OL |  GCA_001020905.1 | 5.13 | 65.70 | 4,724 | ― | Sugar refinery waste treatment pond, Castiglion Fiorentino, Italy | [51] |
Rhodopseudomonas sp. AAP120 |  GCA_001295845.1 | 6.16 | 65.70 | 5,516 | ― | Lagoon, Inner Mongolia, China. |  |
Rhodopseudomonas sp. ATH 2.1.18 |  GCA_003591005.1 | 5.63 | 65.40 | 5,084 | ― | Isolated and purified by C.B. van Niel in 1944 and later transferred to T.E. Meyer at the University of Arizona |  |
Rhodopseudomonas sp. ATH 2.1.37 |  GCA_003591275.1 | 5.49 | 65.00 | 4,932 | ― | Isolated and purified by C.B. van Niel in 1944 and later transferred to T.E. Meyer at the University of Arizona. | [52] |
Rhodopseudomonas sp. B29 |  GCA_000333455.1 | 5.52 | 65.00 | 4,940 | ― | Rice fields, Japan |  |
Rhodopseudomonas sp. BAL398 |  GCA_000935205.1 | 6.12 | 64.20 | 5,844 | ― | Sea surface water, Baltic Sea | [53] |
Rhodopseudomonas sp. BR0C11 |  GCA_010820945.1 | 5.29 | 65.10 | 4,989 | ― | Bromeliad Phytotelma, Carite Forest, Puerto Rico |  |
Rhodopseudomonas sp. BR0G17 |  GCA_010907025.1 | 5.52 | 65.10 | 5,017 | ― | Bromeliad Phytotelma, Guajataca Forest, Puerto Rico |  |
Rhodopseudomonas sp. BR0M22 |  GCA_010907035.1 | 5.29 | 65.20 | 4,761 | ― | Bromeliad Phytotelma, Maricao Forest, Puerto Rico |  |
Rhodopseudomonas sp. Cfx3-05 |  GCA_013377015.1 | 4.83 | 64.40 | 4,511 | ― | Metagenomic assembly from the Ca. Chlorohelix allophototropha enrichment, Canada: near Kenora |  |
Rhodopseudomonas sp. GJ-22 |  GCA_007005445.1 | 5.04 | 65.80 | 4,550 | ― | Wastewater from a pesticide factory, Changsha (Hunan, China) | [54] |
Rhodopseudomonas sp. HaA2 |  GCA_000013365.1 | 5.33 | 66.00 | 4,731 | ― | Uncontaminated freshwater marsh sediment location A, Haren, The Netherlands |  |
Rhodopseudomonas sp. NC 1818 |  GCA_016215605.1 | 5.79 | 66.20 | 5,274 | ― | Metagenomic assembly obtained from the groundwater metagenome BioSample: SAMN15459608 | [55] |
Rhodopseudomonas sp. RCB100 | Â GCA_016584445.1 | 5.46 | 64.99 | 4,907 | 1 | Creek soil, Cascadilla Creek, Ithaca, NY, USA | [56] |
Rhodopseudomonas sp. RI 341 |  GCA_016124795.1 | 5.14 | 63.00 | 4,784 | ― | Hot springs and caldera lake in Raoul Island, New Zealand. |  |
Rhodopseudomonas sp. SK50-23 |  GCA_018279705.1 | 5.86 | 61.90 | 5,281 | ― | Nonpolluted garden soil, Japan | [57] |
Rhodopseudomonas sp. WA056 |  GCA_010906995.1 | 5.06 | 65.80 | 4,562 | ― | Water reservoir, Puerto Rico |  |
Rhodopseudomonas sp. XCP |  GCA_003226555.1 | 5.59 | 65.20 | 5,096 | ― | Contaminant of a green bacterial culture, La Jolla, CA, USA | [58] |
Rhodopseudomonas thermotolerans JA576 |  GCA_003387125.1 | 5.38 | 66.00 | 4,825 | ― | Paddy soils, India | [45] |
Rhodopseudomonas palustris BisB5 |  GCA_000013685.1 | 4.89 | 64.40 | 4,397 | ― | Uncontaminated freshwater marsh sediment location B, Haren, The Netherlands | [1] |
Rhodopseudomonas sp. BisB18 | PRJNA15750 c | 5.51 | 65.00 | 4,867 | ― | Uncontaminated freshwater marsh sediment location B, Haren, The Netherlands | [1] |
Rhodopseudomonas sp. BisA53 | PRJNA15751 c | 5.51 | 64.40 | 4,852 | ― | Uncontaminated freshwater marsh sediment location A, Haren, The Netherlands | [1] |
Rhodopseudomonas sp. DX-1 |  GCA_000177255.1 | 5.4 | 65.40 | 4,849 | ― | Microbial fuel cell | [59] |
Rhodopseudomonas sp. AZUL |  GCA_024330085.1 | 6.05 | 65.60 | 5,596 | ― | High altitude shallow lake, Andes Region, Catamarca, Argentina | [7], this work |