Genome-associations of extended-spectrum ß-lactamase producing (ESBL) or AmpC producing E. coli in small and medium pig farms from Khon Kaen province, Thailand

Pires, João; Huber, Laura; Hickman, Rachel A.; Dellicour, Simon; Lunha, Kamonwan; Leangapichart, Thongpan; Jiwakanon, Jatesada; Magnusson, Ulf; Sunde, Marianne; Järhult, Josef D.; Van Boeckel, Thomas P.

doi:10.1186/s12866-022-02646-3

Table 3 Characteristics of shared plasmids carrying bla_CTX-M-55

From: Genome-associations of extended-spectrum ß-lactamase producing (ESBL) or AmpC producing E. coli in small and medium pig farms from Khon Kaen province, Thailand

Event	Isolate ID	Farm Number	Farm Size	Host	ST	PhG	Size (bp)^a	Incompatibility Group^b	ESBL	Plasmid ARG^c
I	D108CM2	108	Small	Human Contact	354	F	113,076	IncFIB, IncFIC, rep_cluster_2244	bla_CTX-M-55	aph(3'')-Ib, aph(3')-Ia, aph(6)-Id, bla_TEM-1B, dfrA14, sul2
	D128CM1	128	Medium	Human Contact	10	A	115,529	IncFIB, IncFIC, rep_cluster_2244	bla_CTX-M-55	aph(3'')-Ib, aph(3')-Ia, aph(6)-Id, bla_TEM-1B, sul2
	D132PM1	132	Medium	Pig	354	F	115,584	IncFIB, IncFIC, rep_cluster_2244	bla_CTX-M-55	aph(3'')-Ib, aph(3')-Ia, aph(6)-Id, dfrA14, sul2
	D133PM1	133	Medium	Pig	354	F	116,447	IncFIB, IncFIC, rep_cluster_2244	bla_CTX-M-55	aph(3'')-Ib, aph(3')-Ia, aph(6)-Id, bla_TEM-1B, dfrA14, sul2
	D136PM3	136	Medium	Pig	354	F	116,447	IncFIB, IncFIC, rep_cluster_2244	bla_CTX-M-55	aph(3'')-Ib, aph(3')-Ia, aph(6)-Id, bla_TEM-1B, dfrA14, sul2
	D163CM1	163	Medium	Human Contact	58	B1	113,577	IncFIB, IncFIC, rep_cluster_2244	bla_CTX-M-55	aph(3'')-Ib, aph(3')-Ia, aph(6)-Id, bla_TEM-1B, sul2
II	D103CM1	103	Small	Human Contact	278	B1	85,115	IncFIA, IncFIC	bla_CTX-M-55	aac(3)-IId, mcr-3.19, qnrS1
	D18CM1	18	Small	Human Contact	155	B1	86,116	IncFIA, IncFIC	bla_CTX-M-55	aac(3)-IId, mcr-3.19, qnrS1
	D103UM1	103	Small	Human Non-Contact	278	B1	85,115	IncFIA, IncFIC	bla_CTX-M-55	aac(3)-IId, mcr-3.19, qnrS1
	D35PM1	35	Small	Pig	10	A	82,607	IncFIA, IncFIC	bla_CTX-M-55	aac(3)-IId, mcr-3.19, qnrS1
III	D75PM1	75	Small	Pig	101	B1	75,515	IncFIA, IncFIC	bla_CTX-M-55	qnrS1
III	D76PM1	76	Small	Pig	6449	A	77,402	IncFIA, IncFIC	bla_CTX-M-55	qnrS1
IV	D141PM1	141	Small	Pig	10,587	E	1,586	-	bla_CTX-M-55	-
IV	D49PM2	49	Small	Pig	10,578	A	1,586	-	bla_CTX-M-55	-

^aPlasmid size according to the contigs assigned to the different plasmids by MOB-suite
^bIncompatibility group retrieved from MOB-suite
^cAntimicrobial Resistance Genes co-located on the same plasmid

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