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Fig. 3 | BMC Microbiology

Fig. 3

From: Comparison of targeted metagenomics and IS-Pro methods for analysing the lung microbiome

Fig. 3

Graph of the DESeq2 analysis showing the log2fold differential abundance of the different genera between targeted metagenomics and IS-Pro methods (n = 23) in the sputum microbiome of COPD participants. Differences were considered significant with the p-value (adjusted for false discovery rate using Benjamini–Hochberg correction) cut-off of 0.01. Log2fold changes greater than zero indicated an increase in the relevant genera, whereas log2fold changes less than zero indicated a decrease in the relevant genera. All genera above the zero line had an increased relative abundance with the IS-Pro method when compared to targeted metagenomics. The error bars corresponding to the calculated lfcSE (standard error)

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