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Table 3 Analysis of air samples containing Legionella-assigned reads at the species level

From: Detection of Legionella species, the influence of precipitation on the amount of Legionella DNA, and bacterial microbiome in aerosols from outdoor sites near asphalt roads in Toyama Prefecture, Japan

Sample No. Sampling source  type qPCR (copies/m3) qPCR with amoebic co-culture (copies/m3) No. of reads assigned to: Total Number  of clean  sequences Detection rate  of Legionella species  (%)
L. birminghamensis L. geestiana L. nautarum L. pneumophila
22 Road 161.6 0.0 0 0 0 31 31 33,964 0.09
35 Road 245.7 15.8 0 33 0 0 33 185,688 0.02
86 Road 6.3 0.0 0 0 0 122 122 114,647 0.11
98 Bathroom 65.7 0.0 0 0 0 165 165 112,066 0.15
107 Road 365.0 67.7 1743 0 0 0 1743 215,097 0.81
159 Indoor site 72.1 Not tested 0 0 400 0 400 50,889 0.79