Table 1 Overview of genetic characteristics, including virulence and AMR genes, for 18 extended-spectrum cephalosporin-resistant Escherichia coli isolates included in the phenotypic characterization
ID | Year | ST | Phylo- group | Serotype | AMR genes | UPEC associated virulence genes |
|---|---|---|---|---|---|---|
2012-01-1292 | 2012 | 38 | D | O7:H18 | blaCMY-2 | fimA-I, iucA-D, iutA, chuA, chuS-Y, entA-F, entS, fepA-D, fepG, iroN, kpsM, iss, cma, |
2012-01-1295 | 2012 | 38 | D | O7:H18 | blaCMY-2 | fimA-I, iucA-D, iutA, chuA, chuS-Y, entA-F, entS, fepA-D, fepG, iroN, kpsM, iss, iha, cma, |
2012-01-2798 | 2012 | 3249 | A | O8:H9 | blaCMY-2, sul1 | fimC-I, entA, entC, entE-F, entS, fepC-D, fepG, iss, astA, celB, cma |
2012-01-3586 | 2012 | 131 | B2 | O25:H4 | blaCMY-2 | fimB-I, iucA-D, iutA, chuA, chuS-Y, entA-C, entE-F, entS, fepA-D, fepG, iroN, tsh, kpsM, iss, fyuA, iha, usp, celB, mchB, mchC, tsh |
2012–01-707 | 2012 | 38 | D | O7:H18 | blaCMY-2, sul2 | papB, papI, fimA-I, iucB-D, iutA, chuA, chuS-Y, entA-F, entS, fepA-D, fepG, iroN, kpsM, iss, iha, cma |
2012–01-771 | 2012 | 69 | D | O17/O44, O17/O77:H18 | blaCMY-2, sul2, aadA, dfrA | fimB-D, fimF-I, iucA-D, iutA, chuS, chuU-Y, entA-C, entE-F, entS, fepA-D, fepG, iss, astA, cma |
2014-01-1336 | 2014 | 1594 | A | O21:H4 | blaCMY-2, blaTEM1 | fimA-I, iucA-D, iutA, entA-C, entE-F, entS, fepA-D, fepG, kpsM, astA, celB |
2014-01-3678 | 2014 | 117 | D | O24:H4 | blaCMY-2, sul1, aadA | papB-papK, sfaX, fimB-I, iucB-D, iutA, chuA, chuS-Y, entA-C, entE-F, entS, fepA-D, fepG, iroN, pic, vat, ireA, fyuA, mcmA |
2014-01-3680 | 2014 | 1158 | D | O17/O44, O17/O77:H34 | blaCMY-2 | fimA-C, fimE-I, iucA-D, iutA, chuA, chuS-Y, entA-C, entE-F, entS, fepA-D, fepG, kpsM, iss, iha |
2014-01-4267 | 2014 | 191 | A | O150:H20 | blaCMY-2 | fimA-I, entA-C, entE-F, entS, fepA-D, fepG, iha, mchB, mchC, mchF |
2014-01-4991 | 2014 | 57 | D | ONT:H18 | blaCMY-2 | fimA-C, fimE-I, chuA, chuS-Y, entA-C, entE-F, entS, fepA-D, fepG |
2014-01-5104 | 2014 | 115 | D | O102:H6 | blaCMY-2 | fimA-I, iucB-D, iutA, chuV-Y, entA-F, entS, fepA-D, fepG, kpsM, iss, astA, cba, celB, cma |
2014-01-5656 | 2014 | 10 | A | O125ab:H4 | blaCMY-2 | fimB-I, iucB-D, iutA, entA-C, entE-F, entS, fepA-D, fepG, iss, fyuA, astA, iha |
2014-01-7011 | 2014 | 1944 | D | O38:H39 | blaCMY-2 | fimF-H, chuA, chuS-Y, entA-F, entS, fepA-D, fepG, iha, cma, mchB, mchC, mchF |
2014-01-7037 | 2014 | 355 | B2 | O2:O50/O2:H5 | blaCMY-2 | fimB-I, iucA-D, iutA, chuA, chuS-Y, entA-C, entE-F, entS, fepA-D, fepG, kpsM, iss, fyuA, astA, iha, usp, cba, celB, cma |
2016–22-220 | 2016 | 429 | B2 | O50/O2:H1 | blaCMY-2, sul1, aadA, aac, tetA | fimA-I, iucB-D, iutA, chuA, chuS-Y, entA-F, entS, fepA-D, fepG, iroN, kpsM, iss, fyuA, usp, mchF |
2016–22-832 | 2016 | 442 | B1 | O91:H21 | blaCMY-2, dfrA | fimB-I, iucB-D, iutA, entA-C, entE-F, entS, fepA-D, fepG, iroN, mchF |
2016-22-1061 | 2016 | 2040 | A | O159:H20 | blaCMY-2 | fimA-I, iucB-D, iutA, entA-F, entS, fepA-D, fepG, iroN, tsh, cma |