Skip to main content

Table 4 The analysis of SARS-COV-2 N protein phosphorylation site multiple amino acid variant

From: Identification and functional analysis of the SARS-COV-2 nucleocapsid protein

Sites Deletion Insertion Replacements
Variant score Prediction Variant score Prediction Variant score Prediction
49 T T49_S51del −4.946 Da T49_S51dup −1.515 N T49delinsSW −3.009 D
232S S232_M234del −1.561 N S232_M234dup −1.573 N S232delinsMS −1.350 N
245 T T245_T247del −5.955 D T245_T247dup −3.081 D T245delinsTK −0.686 N
366 T T366_P368del −3.160 D T366_P368dup −0.983 N T366delinsPK −0.985 N
379 T T379_A381del −1.021 N T379_A381dup 0.060 N T379delinsAL −1.584 N
391 T T391_T393del −0.007 N T391_T393dup −0.175 N T391delinsTL −1.299 N
393 T T393_L395del 0.779 N T393_L395dup −1.736 N T393delinsLP −1.429 N
413S S413_D415del −1.187 N S413_D415dup 1.058 N S413delinsDS 1.891 N
417 T T417_A419del 0.182 N T417_A419dup 0.488 N T417delinsAA 0.420 N
  1. aDefault threshold is − 2.5, that is: Variants with a score equal to or below − 2.5 are considered “Deleterious”; Variants with a score above − 2.5 are considered “Neutral”