Table 2 Genes with functional annotation, with sites under positive selection pressure in recurrent but not in single infections. Pvalues are given for log-likelihood ratio test between M1a and M2a models with or without adjustment for multiple hypothesis testing. Adjusted p-values < 0.05 were considered significant
gene | pvalue-recurrent | pvalue-single | padjust-recurrent | padjust-single |
|---|---|---|---|---|
tyrB | 2.12E-05 | 9.97E-01 | 3.21E-04 | 1.00E+ 00 |
cdd3 | 6.02E-12 | 1.06E-01 | 1.63E-10 | 1.00E+ 00 |
fatC | 1.10E-04 | 7.96E-01 | 1.45E-03 | 1.00E+ 00 |
opuCC | 1.41E-03 | 6.55E-01 | 1.46E-02 | 1.00E+ 00 |
asnB | 2.22E-07 | 8.77E-02 | 4.23E-06 | 1.00E+ 00 |
glsA | 1.81E-07 | 9.70E-01 | 3.59E-06 | 1.00E+ 00 |
gltA | 8.87E-05 | 9.96E-01 | 1.23E-03 | 1.00E+ 00 |
group_18063 | 1.90E-03 | 9.97E-01 | 1.77E-02 | 1.00E+ 00 |
selA | 1.71E-03 | 5.32E-02 | 1.66E-02 | 1.00E+ 00 |
prdF | 0.00E+ 00 | 9.60E-01 | 0.00E+ 00 | 1.00E+ 00 |
rapL | 1.26E-07 | 8.07E-01 | 2.66E-06 | 1.00E+ 00 |
cheC | 2.29E-03 | 7.83E-01 | 2.11E-02 | 1.00E+ 00 |
mtnN | 1.89E-05 | 7.46E-01 | 2.95E-04 | 1.00E+ 00 |
accA | 5.01E-03 | 6.96E-01 | 4.09E-02 | 1.00E+ 00 |
gph | 2.73E-03 | 5.43E-01 | 2.43E-02 | 1.00E+ 00 |
hpt | 3.15E-03 | 8.94E-01 | 2.70E-02 | 1.00E+ 00 |
hydE | 1.06E-04 | 9.99E-01 | 1.44E-03 | 1.00E+ 00 |
actI | 1.14E-03 | 9.16E-01 | 1.25E-02 | 1.00E+ 00 |
folC | 0.00E+ 00 | 9.83E-01 | 0.00E+ 00 | 1.00E+ 00 |
xylA | 4.29E-15 | 9.78E-01 | 1.30E-13 | 1.00E+ 00 |
csdA | 1.63E-171 | 9.09E-01 | 1.05E-169 | 1.00E+ 00 |
dacF | 1.62E-09 | 4.24E-02 | 3.89E-08 | 8.73E-01 |
tcdB | 7.06E-20 | 1.31E-02 | 3.03E-18 | 3.98E-01 |
rnr | 7.34E-16 | 8.11E-01 | 2.52E-14 | 1.00E+ 00 |
regB | 2.47E-07 | 6.61E-03 | 4.54E-06 | 2.43E-01 |