Primers | Forward and reverse sequences (5’-3’) | Expected sizes (bp) | References |
---|---|---|---|
1_16SF | F-AGGAGGTGATCCAACCGCA R-AACTGGAGGAAGGTGGGAT | 350 | [22] |
16SrRNA | MSHA-AAAAAGCGACAAACCTACGAG PA-AGAGTTTGATCCTGGCTCAG | 620 | [23] |
IS2404 (nested 1) | pGp1: AGGGCAGCGCGGTGATACGG pGp2: CAGTGGATTGGTGCCGATCGAG | 400 | |
IS2404 (nested 2) | pGp3: GGCGCAGATCAACTCGCGGT pGp4: CTGCGTGGTGCTTTACGCGC | 200 | |
ITS | ITS1-TCCGTAGGTGAACCTGCGG ITS4-TCCTCCGCTTATTGATATGC | variable | [26] |