InterPro Entry | PFAM | Name | Abbreviation | Function | Source |
---|---|---|---|---|---|
 | PF00491 | ureohydrolases |  | Ammonia to urea conversion | PDC |
 | Arginase | ArgI | L-arginine + H(2) O < => L-ornithine + urea | PDC | |
 | Agmatinase | SpeB | Agmatine + H(2) O < => putrescine + urea | PDC | |
 | Formimidoylglutaminase | HutG | N-formimidoyl-L-glutamate + H(2) O < => L-glutamate + formamide | PDC | |
IPR015868 | PF04960 | Glutaminase |  | Glutamine + H2O → Glutamate + NH3 | PDC, T |
IPR000292 | PF01226 | Formate/nitrite transporter | Â | Transporter | PDC, T |
IPR025736 | PF13556 | PucR C-terminal helix-turn-helix domain | PucR | PucR-like transcriptional regulator | PDC, T |
IPR000825 | PF01458 | Uncharacterized protein family (UPF0051) | Â | Chaperone proteins for nitrogenase production | PDC, T |
 |  | NifS | Metallocluster formation Nitrogenase | PDC, T | |
 |  | NifU | Metallocluster formation Nitrogenase | PDC, T | |
IPR005346 | PF03658 | Ubiquitin | RnfH family | Electron transport | PDC, T |
PF02508 | Rnf-Nqr subunit, membrane protein | Rnf-Nqr | Nitrogen fixation | PDC, T | |
PF03116 | Nqr2 family | Nqr2 | Nitrogen fixation | PDC, T | |
 | RnfD family | RnfD | Nitrogen fixation | PDC, T | |
 | RnfE family | RnfE | Nitrogen fixation | PDC, T | |
PF03060 | Nitronate monooxygenase | Â | Nitrogen metabolism | PDC, T | |
IPR010349 | PF06089 | L-asparaginase II | Â | Hydrolysis of L-asparagine to L-aspartate and ammonium. | PDC, T |
PA3862 | PF02423 | Â | DauB | NAD(P)H-dependent anabolic L-arginine dehydrogenase | PDC, T, Steen et al., 2012 |
PA3863 | PF01266 | Â | DauA | FAD-dependent catabolic D-arginine dehydrogenase | PDC, T, Steen et al., 2012 |
PA3864 | PF08348 | Â | DauR | Transcriptional regulator of the dauBAR operon | PDC, T, Steen et al., 2012 |
PF13309 | Â | Â | Â | PDC, T, Steen et al., 2012 | |
PA14_13750 | PF07690 | Nitrite extrusion protein (putative) | NarK2 | Membrane protein; Transport of small molecules | PDC, T, Steen et al., 2012 |
PA14_13770 | PF07690 | Nitrite extrusion protein | NarK1 | Membrane protein; Transport of small molecules | PDC, T, Steen et al., 2012 |
PA3875 | PF14710 | Â | NarG | Energy metabolism | PDC, T, Steen et al., 2012 |
PF00384 | Â | Â | Â | PDC, T, Steen et al., 2012 | |
PF01568 | Â | Â | Â | PDC, T, Steen et al., 2012 | |
PA14_13800 | PF13247 | Nitrate reductase | NarH | β-subunit, Energy metabolism | PDC, T, Steen et al., 2012 |
PF14711 | Â | Â | Â | PDC, T, Steen et al., 2012 | |
PA14_13810 | PF02613 | Nitrate reductase | NarJ | Δ-chain, Energy metabolism | PDC, T, Steen et al., 2012 |
PA14_13830 | PF02665 | Nitrate reductase | NarI | γ-chain, Energy metabolism | PDC, T, Steen et al., 2012 |
PA3878 | PF02518 | two-component sensor | NarX | Â | PDC, T, Steen et al., 2012 |
PF00672 | Â | Â | Â | PDC, T, Steen et al., 2012 | |
PF07730 | Â | Â | Â | PDC, T, Steen et al., 2012 | |
PF13675 | Â | Â | Â | PDC, T, Steen et al., 2012 | |
PA3879 | PF00072 | two-component response regulator | NarL | Response regulator | PDC, T, Steen et al., 2012 |
PF00196 | Â | Â | Â | PDC, T, Steen et al., 2012 | |
PA14_13850 | PF04055 | Heme d1 biosynthesis protein | NirJ | Heme d1 Biosynthesis | PDC, T, Steen et al., 2012 |
PA0516 | PF02239 | Heme d1 biosynthesis protein | NirF | Heme d1 Biosynthesis | PDC, T, Steen et al., 2012 |
PA0514 | Â | Heme d1 biosynthesis protein | NirL | Heme d1 Biosynthesis | PDC, T, Steen et al., 2012 |
PA0520 | PF07728 | Â | NirQ | Regulatory protein | PDC, T, Steen et al., 2012 |
PF08406 | Â | CbbQ | post-translational activation of Rubisco -- photosynthesis | PDC, T, Steen et al., 2012 | |
 |  |  | NorQ, | Post-translational activation of Rubisco -- photosynthesis | |
PA14_06750 | PF13442 | nitrite reductase precursor | NirM | Cofactor biosynthesis, Energy metabolism | PDC, T, Steen et al., 2012 |
PA3870 | PF00994 | molybdopterin biosynthetic protein A1 | MoaA1 | Biosynthesis of cofactors, prosthetic groups and carriers | PDC, Steen et al. 2012 |
PF03453 | Â | Â | Â | PDC, Steen et al. 2012 | |
PF03454 | Â | Â | Â | PDC, Steen et al. 2012 | |
PA14_13260 | PF00994 | molybdopterin biosynthetic protein B1 | MoaB1 | Â | PDC |
 | PF00394 | Multicopper oxidase |  |  | PDC, T |
PA0519 | PF13442 | Nitrate reductase | NirS | Energy metabolism | PDC, T, Steen et al., 2012 |
 | Nitrate reductase | NirS | Energy metabolism | PDC, T, Steen et al., 2012 | |
PF02239 | Nitrate reductase | NirS | Energy metabolism | PDC, T, Steen et al., 2012 | |
PF05940 | NnrS protein | Â | Â | PDC, T | |
 |  | NirK | Reduction of nitrite to nitrous oxide | PDC, T | |
 |  | Nor | Reduction of nitrite to nitrous oxide | PDC, T | |
PA14_06810 | PF00034 | nitric-oxide reductase | NorB-NorC | Subunit B, C | PDC, T, Steen et al., 2012 |
PA14_06830 | PF00115 | nitric-oxide reductase | NorB-NorC | Subunit B, C | PDC, T, Steen et al., 2012 |
PA14_06840 | PF00092 | Â | NorD | Putative dinitrification protein | PDC, T, Steen et al., 2012 |
PA14_20230 | PF04205 | Â | NosR | Regulatory protein for N2O reductase | PDC, T |