Fig. 3
From: Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica
EDGAR (a) and Parsnp (b) generated phylogenetic trees of genotype 2 M. haemolytica strains. Both trees were constructed with DNA shared between 34 genotype 2 M. haemolytica strains sequenced in this study and 11 genotype 2 strains (bold and italicized) with a closed genome available in GenBank. Lower case letters represent subtypes. Single asterisks depict strains that were not subtyped with statistical confidence in a previous study and double asterisks depict those previously identified as recombinant [16]. Sequence between and including direct repeats flanking the insertion of ICEMh1 was masked from the core genome sequences used to generate the Parsnp tree, which equaled 76% of a reference genome (GenBank# CP004752)