Fig. 2
From: Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica
EDGAR (a) and Parsnp (b) generated phylogenetic trees of genotype 1 M. haemolytica strains. Both trees were constructed with DNA shared between 35 genotype 1 M. haemolytica strains sequenced in this study and one genotype 1 strain with a closed genome available in GenBank. Lower case letters represent subtypes. The label for the single genotype 1 strain from GenBank is bold and italicized. Asterisks depict strains that were not subtyped with statistical confidence in a previous study [16]. The scale bar represents substitutions per site. Both trees are midpoint rooted. Sequence between and including direct repeats flanking the insertion of ICEMh1 were masked from the core genome sequences used to generate the Parsnp tree, which equaled 81% of a reference genome (GenBank# CP017502)