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Table 2 Metabolism and enzyme GO terms significantly enriched in S. maltophilia JV3-specific response (VSR) genes

From: Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia

GO categoryTermCount%FDR
Biological processsingle-organism metabolic process4922.682.47E-06
 Small molecule metabolic process2712.55.27E-04
  organic acid metabolic process2210.191.64E-05
   carboxylic acid metabolic process219.722.21E-05
    monocarboxylic acid metabolic process188.338.53E-07
     flavonoid glucuronidation146.483.02E-09
 flavonoid biosynthetic process146.483.02E-09
 oxidation-reduction process219.720.0433
transition metal ion transport73.240.0468
Molecular functioncatalytic activity8941.200.00174
 transferase activity, transferring glycosyl groups177.870.00203
  transferase activity, transferring hexosyl groups146.481.76E-07
   glucuronosyltransferase activity125.569.70E-06
  UDP-glycosyltransferase activity167.410.00155
carboxylic ester hydrolase activity115.097.24E-04
Cellular componentextracellular region209.260.0295
  1. Gene ontology (GO) enrichment analysis was performed on the VSR genes using DAVID Bioinformatics Resources 6.8. Of the 225 VSR genes, 216 were identified in DAVID and considered for analysis. GO analysis identifies terms relating to the biological process, molecular function, or cellular component that are significantly enriched among a list of genes. Indented terms indicate child terms, or subcategories, of the term listed above, with the parent term left-aligned. Note that the degree of indention of each term does not reflect absolute GO term level within each category. Count is the number of genes corresponding to each GO term. Percent is the count/216 total analyzed. FDR is the false discovery rate-corrected EASE enrichment score to account for multiple testing. Only terms with FDR <0.05 and the most descriptive term for each unique gene list are shown