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Fig. 2 | BMC Microbiology

Fig. 2

From: Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia

Fig. 2

Heatmap of C. elegans differentially expressed genes in response to S. maltophilia. Differentially expressed genes from RNA-sequencing include genes with fold-change > 2 and FDR-adjusted p-value < 0.05 between any treatment comparisons. Heatmap was generated with log transformed FPKM values and visualized using the heatmap.2 function in gplots package in R. Dendrogram on the y-axis represents degree of similarity of treatments based on gene expression profiles. Dendrogram on the x-axis represents degree of similarity of gene clusters based on expression profile across treatments. Gene expression is color coded, with red indicating lower expression and yellow indicating higher expression. The scaling option was used so that each gene is individually normalized across treatments

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