Table 1 Summary of the phylogenetic analysis
Group | Within p-dista | Number of sequences | Specific aa. | Species | Collection country | Year of collection | ST | CC | Serogroup | CIP resistance phenotype f |
|---|---|---|---|---|---|---|---|---|---|---|
Overall | 0.045 | 226 | 1931–2017 | |||||||
Outlier | 0.143 c,d | 15 | L123D; A124G; S139A; V269I; I402M; N411D; M443A; S504A | Eikenella corrodens (2); N.animaloris (2); N.elongata (2); N.weaveri (2); N.animalis; N.canis; N.elongata subspecies glycolytica; N.mucosa; N.polysaccharea; N.sicca; N.zoodegmatis | USA (2); South Korea (1); Norway (1); Germany (1); France (1); Sweden (1) | 1954–2017 | ST3557; ST3706; ST9346; ST9806 | |||
1 | 0.06 | 2 | E441H; K455H; S488E; G494S; I509V; E518A; E519D | N.meningitidis; N.subflava | China;? | 2005–2009 | ST4832 | CC4821(1) | C (1) | I (1) |
2 | 0.017 | 2 | 0 | N.meningitidis | China | 2007–2011 | ST9477; ST5636 | CC4821; UA | B | R (1) |
3 | 0.032 b | 1 | 0 | N.meningitidis | China | 2009 | ST12300 | CC4821 | B | I (1) |
4 | 0.025 b | 1 | 0 | N.meningitidis | China | 2006 | ST5751 | UA | B | R |
5 | 0.04 | 26 | 0 | N.meningitidis (20); N.lactamica (5) | China (13); UK (1); USA (1) | 1992–2014 | ST5473 (3); ST3493; ST8241; ST4821; ST12316; ST162; ST6930; ST8815; ST5662; ST3436; ST2146; ST8491; ST8920 | CC4821 (9); UA (2); CC162; CC32; CC198; CC613 | B (7); C (4); W (2); NG | R (11); I (2); S (1) |
6 | 0.03 | 27 | 0 | N.meningitidis (26); N.cinerea | China | 2005–2014 | ST7 (8); ST9454 (2); ST3200 (2); ST5798; ST8241; ST10235; ST5664; ST10446; ST5586; ST5082; ST5084; ST7962; ST6933 | CC5 (10); CC4821 (8); UA (2); CC77; CC174 | A (9); B (7); NG (2); E(2); C; X | R (19); I (2) |
7 | 0.002 | 12 | D210K, E456K, E483K, V486I, N836S, D917G | N.gonorrhoeae | Canada (2); USA (2); Japan (1) | 2010–2015 | ST1901 (2); ST1903 (2); ST1928; ST7363; ST7367; ST8122; ST8127; ST12536; ST1902 | R (5); S (4) | ||
8 | 0.003 e | 140 | 0 | N.meningitidis | China (125); USA (5); UK (4); Germany (4); Norway (1); France (1); Iceland (1); Benin (1); Gambia (1); South Africa (1); Burkina Faso (1); Canada (1) | 1931–2016 | ST4821 (35); ST5 (11); ST11 (5); ST3 (5); ST7 (5); ST3200 (3); ST6933 (2); ST10737 (2); ST32 (2); ST4 (2); ST9454 (2); ST4831 (2); ST5586 (2); ST10; ST10474; ST10607; ST11920; ST12274; ST12276; ST12295; ST12311; ST12314; ST12767; ST12790; ST136; ST177; ST213; ST2146; ST23; ST269; ST2875; ST2881; ST334; ST3436; ST41; ST43; ST4367; ST461; ST4820; ST4896; ST4897; ST4980; ST5242; ST53; ST5464; ST5555; ST5586; ST5610; ST5614; ST5615; ST5632; ST5663; ST5789; ST5798; ST5863; ST5944; ST658; ST6928; ST7303; ST74; ST8445; ST845; ST8789; ST8798; ST9455; ST9456; ST9754; ST9792; ST9936; | CC4821 (68); CC5 (16); CC1 (8); UA (8); CC11 (6); CC174 (3); CC32 (3); CC41/44 (3); CC4 (2); CC175 (2); CC103; CC18; CC181; CC198; CC213; CC23; CC269; CC334; CC364; CC4240/6688; CC461; CC53; CC5615; CC8 | C (43); B (41); A (26); W (8); E (2); NG (1); X (2); Y (2); cnl; I | R (28); I(17); S (81) |