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Table 2 List of the 20 most differentially down regulated genes of the shared genome of the three E. coli strains in lamb’s lettuce medium vs. M9 minimal medium containing 0.4% (w/v) glucose

From: Differential transcriptome analysis of enterohemorrhagic Escherichia coli strains reveals differences in response to plant-derived compounds

   log2FC
Gene symbol Gene descriptiona O157:H str. 3072/96 O104:H4 str. C227–11ϕcu O157:H7 str. Sakai
zinT metal-binding protein ZinT −8.15 −5.86 −8.25
trpE anthranilate synthase subunit TrpE −6.41 −5.64 −8.41
hycA regulator of the transcriptional regulator FhlA −7.72 −7.13 −4.89
ykgM putative ribosomal protein −7.30 −3.46 −7.39
thiE thiamine phosphate synthase −5.31 −7.18 −4.75
thiF ThiS adenylyltransferase −5.51 −6.84 −4.78
gadB glutamate decarboxylase B −5.39 −5.18 −6.47
thiC phosphomethylpyrimidine synthase −5.41 −6.44 −4.80
thiH 2-iminoacetate synthase −5.01 −6.66 −4.80
mtr tryptophan:H(+) symporter Mtr tryptophan transporter of high affinity −5.25 −4.98 −6.11
gadA glutamate decarboxylase A −5.04 −5.77 − 5.32
thiG 1-deoxy-D-xylulose 5-phosphate:thiol sulfurtransferase −4.90 −6.43 −4.64
trpD anthranilate synthase subunit TrpD −5.28 −3.62 −6.84
gadC L-glutamate:4-aminobutyrate antiporter −5.11 −4.07 −6.38
yegX putative hydrolase −3.75 −6.42 −3.80
nadB L-aspartate oxidase −4.34 − 4.54 −4.90
yhiM inner membrane protein with a role in acid resistance −4.80 −2.92 −5.92
thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase −3.74 −5.56 −4.09
alaE L-alanine exporter −3.99 −5.73 −3.33
grcA stress-induced alternate pyruvate formate-lyase subunit −4.54 − 4.86 −3.29
  1. aGene descriptions were retrieved from the NCBI database