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Table 4 Selected stress tolerance, symbiotic and plant growth promoting functional genes found in the genome of R. cellulosilyticum strain R3

From: Genomic insights into plant growth promoting rhizobia capable of enhancing soybean germination under drought stress

Feature ID Type Function Aliases Start length Location
Exo X gene
 LKJIOFBO_00637 gene Signal transduction histidine-protein kinase ArlS arlS, 2.7.13.3 5,173 1,365 NODE_12_length_14500_cov_30.995518
3,808–5,173 (−Strand)
 LKJIOFBO_01604 gene Response regulator aspartate phosphatase J rapJ_2, 3.1.-.- 26,133 1,122 NODE_32_length_40656_cov_31.105864
26,133–27,255 (+Strand)
htrA
 LKJIOFBO_03117 gene Serine protease Do-like HtrA htrA_1, 3.4.21.107 6,151 1,203 Contig:NODE_64_length_16935_cov_30.627930
6,151–7,354 (+ Strand
 LKJIOFBO_04119 gene Serine protease Do-like HtrA htrA_2, 3.4.21.107 24,021 1,362 Contig:NODE_203_length_47982_cov_29.809929
24,021–25,383 (+ Strand)
Nif gene
 LKJIOFBO_00593 Gene Cysteine desulfurase IscS iscS_2, 2.8.1.7 40,060 1,146 NODE_11_length_78586_cov_30.601507
 LKJIOFBO_01424_CDS CDS Putative cysteine desulfurase NifS nifS, 2.8.1.7 72 264 NODE_29_length_80092_cov_31.155697
Nod A
 LKJIOFBO_00005 gene Beta-N acetylglucosaminidase lytD, 3.2.1.96 4,582 2,643 Contig: NODE_1_length_64013_cov_32.129894
4,582–7225 (+Strand)
 LKJIOFBO_00006 gene Teichoic acid poly (ribitol-phosphate) polymerase tarL, 2.7.8.-    Contig: NODE_1_length_64013_cov_32.129894
7,268–9,128 (− Strand)
Siderophore
 LKJIOFBO_02039 gene putative siderophore transport system permease protein YfiZ yfiZ_1 14,769 1,002 Contig: NODE_38_length_39997_cov_29.245344
14,769–15,771 (+ Strand)
 LKJIOFBO_02038 gene putative siderophore-binding lipoprotein YfiY yfiY 14,769 978 Contig: NODE_38_length_39997_cov_29.245344
13,660–14,638 (− Strand)
IAA
 LKJIOFBO_01515 gene Inner membrane protein YiaA yiaA 11,965 264 Contig: NODE_30_length_44008_cov_32.195396
11,701–11,965 (− Strand)
 LKJIOFBO_02665 gene tRNA dimethylallyltransferase miaA, 2.5.1.75 10,955 945 Contig: NODE_48_length_27057_cov_29.404369
EptA
 LKJIOFBO_03929 gene Heptaprenyl diphosphate synthase component 1 hepS, 2.5.1.30 8,080 765 Contig: NODE_102_length_18176_cov_29.706535
7,315–8,080 (− Strand)
 LKJIOFBO_00595 gene Septation ring formation regulator EzrA ezrA 43,376 1,689 Contig: NODE_11_length_78586_cov_30.601507
41,687–43,376 (− Strand)