Table 2 Selected genes in key functional categories differentially expressed in planktonic cells cultured in 4.5 mM [Ca2+] compared to planktonic cells cultured in control medium
Functional group | RefSeq | Product | Fold change (log2) | FDR (adjusted p value) |
|---|---|---|---|---|
Siderophore synthesis | ||||
| Â | WP_060383187.1 | Siderophore alcaligin biosynthesis protein | 8.20 | 4.1E-41 |
WP_060383190.1 | LucA/lucC family siderophore biosynthesis protein | 5.64 | 1.7E-44 | |
WP_060383888.1 | Siderophore biosynthesis protein | 7.21 | 6.4E-61 | |
Iron transfer | ||||
| Â | WP_060383657.1 | Iron transporter | 2.45 | 3.7E-13 |
WP_060383656.1 | Ferrous iron transport protein B | 1.53 | 3.2E-09 | |
WP_060381373.1 | NifU family protein (iron-sulfur cluster binding) | 1.19 | 4.7E-10 | |
T9SS secretion | ||||
| Â | WP_060382679.1 | T9SS C-terminal target domain-containing protein | 7.61 | 8.0E-43 |
WP_060383582.1 | T9SS C-terminal target domain-containing protein | 1.58 | 2.8E-05 | |
WP_060383035.1 | T9SS C-terminal target domain-containing protein | 1.65 | 6.6E-10 | |
TonB-dependent receptor | ||||
| Â | WP_060383861.1 | TonB-dependent receptor | 6.03 | 6.9E-40 |
WP_060383182.1 | TonB-dependent receptor | 6.01 | 4.4E-49 | |
WP_060383101.1 | TonB-dependent receptor | 5.18 | 3.7E-33 | |
WP_060382917.1 | TonB-dependent receptor | −1.22 | 5.7E-04 | |
WP_060382921.1 | TonB-dependent receptor | −1.59 | 4.4E-02 | |
Calcium homeostasis | ||||
| Â | WP_060383353.1 | ABC transporter permease | 1.56 | 1.9E-11 |
WP_060383434.1 | Outmembrane efflux protein | 1.46 | 2.3E-08 | |
WP_060383433.1 | Efflux transporter periplasmic adaptor | 1.21 | 1.7E-07 | |
Integral membrane component | ||||
| Â | WP_060381689.1 | Flagellar motor protein MotA | 1.47 | 2.9E-06 |
WP_060383854.1 | Aquaporin | 1.69 | 1.9E-11 | |
Respiration system | ||||
|  | WP_060381562.1 | NADH:ubiquinone oxidoreductase subunit H | −1.01 | 1.4E-02 |
WP_060381556.1 | NADH dehydrogenase | −1.02 | 2.4E-03 | |
WP_060381560.1 | NADH oxidoreductase (quinone) subunit F | −1.12 | 9.2E-03 | |
WP_060381555.1 | NADH-quinone oxidoreductase subunit A | −1.12 | 5.3E-03 | |
WP_060381577.1 | Cytochrome c oxidase subunit I | −1.20 | 5.4E-02 | |
WP_060381576.1 | Cytochrome C oxidase subunit II | −1.23 | 3.5E-02 | |
WP_060381574.1 | Cytochrome C | −1.30 | 3.2E-02 | |
WP_060382919.1 | Cytochrome-c peroxidase | −1.31 | 8.7E-03 | |
WP_060381571.1 | Quinol:cytochrome C oxidoreductase | −1.41 | 3.2E-02 | |
WP_060381575.1 | Quinol:cytochrome C oxidoreductase | −1.32 | 2.9E-02 | |
Gliding motility | WP_060383259.1 | Gliding motility protein GldN | −1.01 | 1.5E-02 |
Quorum sensing | WP_060383185.1 | LuxR family transcriptional regulator | 3.94 | 2.8E-29 |