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Table 1 Characteristics of studies included in the meta-analysis for rifampicin-resistance tuberculosis detection

From: Xpert MTB/RIF assay for the diagnosis of rifampicin resistance in different regions: a meta-analysis

Study

First author [ref.]

Year

Country

Study setting

Male (%)

HIV (%)

Age (year) (Median, IQR)

Patient selecting method

Total samples n (included n)

Specimen type (samples n)

Gold standard

1

Al-Ateah SM [15]

2012

Saudi Arabia

Laboratory

126 (53.8)

1 (0.4)

NR

Cross-sectional Unspecified

234 (239)

Sputum (56), BAL (116); tissue (16), CSF (14), FNA (5), body fluid (22), abscess (10)

DST

2

Antonenka U [16]

2013

German

Clinical

NR

NR

NR

Retrospective Unspecified

121 (121)

Respiratory specimens (121)

Solid or liquid media DST

3

Balcells ME [17]

2012

Chile

Clinical

127 (79.4)

160 (100)

Adults> 18 (37.4, 19–65)

Cross-sectional Prospective Consecutive

160 (12)

Sputum (160)

Solid and liquid media DST

4

Barmankulova A [18]

2015

Kyrgyzstan

Laboratory

172 (57.3)

NR

Median 34, IQR 25–45

Cross-sectional Unspecified

300 (191)

Sputum (300)

Solid and liquid media DST

5

Barnard M [19]

2012

South Africa

Laboratory

NR

NR

NR

Unspecified Consecutive

282 (68)

Sputum (282)

DST

6

Bates M [20]

2013

Zambia

Clinical

NR

22 (2.4)

Children≤15

Prospective Unspecified

930 (930)

Sputum, gastric lavage aspirate (930)

Liquid culture

7

Biadglegne F [21]

2014

Ethiopia

Clinical

99 (42.9)

NR

14.7% ≤ 14, 85.3% > 14

Cross-sectional Unspecified

231 (32)

Lymph node aspirates (231)

DST

8

Blakemore R [22]

2010

America

Clinical

NR

NR

NR

Unspecified Unspecified

168 (79)

Sputum (168)

DST

9

Boehme CC [23]

2010

 

Clinical

929 (53.7)

392 (22.7)

Adults≥18 (34, 17–88)

Prospective Consecutive

1730 (720)

Sputum (1730)

Solid media DST

   

Peru

 

181 (53.1)

3 (0.9)

Adults≥18 (31, 18–79)

 

341 (209)

Sputum (341)

Solid media DST

   

Azerbaijan

 

251 (71.1)

9 (2.6)

Adults≥18 (37, 20–69)

 

353 (143)

Sputum (353)

Solid or liquid media DST

   

South Africa

 

357 (49.2)

376 (51.8)

Adults≥18 (34, 18–74)

 

726 (183)

Sputum (726)

Liquid media DST

   

India

 

140 (45.2)

4 (12.9)

Adults≥18 (30, 17–88)

 

310 (185)

Sputum (310)

Liquid media DST

10

Boehme CC [24]

2011

 

Clinical

4043 (60.8)

1255 (18.9)

Adults≥18 (38, 29–50)

Unspecified Consecutive

6648 (1060)

Sputum (6648)

DST

   

Peru

 

607 (51.2)

5 (0.4)

Adults≥18 (37, 26–53)

 

1185 (185)

Sputum (1185)

Liquid media DST

   

Azerbaijan

 

748 (99.9)

1 (0.1)

Adults≥18 (36, 30–44)

 

749 (211)

Sputum (749)

Liquid media DST

   

South Africa

 

1275 (50.6)

947 (37.5)

Adults≥18 (36, 29–46)

 

2522 (188)

Sputum (2522)

Solid media DST

   

Uganda

 

202 (54.3)

254 (68.3)

Adults≥18 (32, 26–38)

 

372 (116)

Sputum (372)

Solid media DST

   

India

 

628 (69.6)

40 (4.4)

Adults≥18 (45, 32–58)

 

902 (103)

Sputum (902)

Solid media DST

   

Philippines

 

583 (63.5)

8 (0.9)

Adults≥18 (47, 34–58)

 

918 (257)

Sputum (918)

DST

11

Bowles EC [25]

2011

Netherlands

Clinical

NR

NR

NR

Unspecified Unspecified

89 (60)

Sputum (86), pleural fluid (1), gastric fluid (1), bronchial washing (1)

DST

12

Carriquiry G [26]

2012

Peru

Clinical

95 (73)

131 (100)

Adults≥18 (35, 29–42)

Cross-sectional Unspecified

131 (39)

Sputum (131)

Solid and liquid media DST

13

Cayci YT [27]

2017

Turkey

Laboratory

NR

NR

NR

Unspecified Unspecified

34 (34)

Respiratory (19) and Non-respirator specimens (15)

Liquid media DST

14

Chakravorty S [28]

2017

South, Africa, India

Laboratory

NR

NR

NR

Prospective Unspecified

139 (139)

Sputum (139)

Liquid media DST

15

Chiang TY [29]

2018

China

Clinical

876 (29.6)

NR

Median 55, IQR 35.8–70.0

Prospective Unspecified

2957 (697)

Sputum (697)

Solid and liquid culture

16

Chikaonda T [30]

2017

Malawi

Clinical

NR

200 (57.0)

Adult≥18

Retrospective Random

351 (188)

Sputum (60)

Solid and liquid media DST

17

Ciftçi IH [31]

2011

Turkey

Clinical

NR

NR

NR

Unspecified Unspecified

85 (24)

Sputum (50), BAL (25), thorasynthesis fluid (5), urine (5)

Liquid media DST

18

Deggim V [32]

2013

Switzerland

Clinical

NR

NR

NR

Prospective Unspecified

79 (10)

Respiratory and Non-respirator specimens (79)

DST

19

Dharan NJ [33]

2016

Russia, Peru, Hong Kong, Haiti, USA

Clinical

358 (65.8)

536 (98.5)

Median 54.2, IQR 19–88

Unspecified, Unspecified

544 (185)

Sputum (185)

DST

20

Dorman SE [34]

2012

South Africa

Laboratory

6469 (93.8)

602 (8.7)

Median 43, IQR 34–49

Cross-sectional Consecutive

6893 (144)

Sputum (6893)

Liquid media DST

21

Dorman SE [35]

2018

South Africa, Uganda, Kenya, India, China, Georgia, Belarus, Brazil

Clinical

1059 (60.4)

441 (25.2)

Median 38, IQR 28–50

Prospective Unspecified

1753 (551)

Sputum (551)

Liquid media DST

22

Du J [36

2015

China

Clinical

70 (55.6)

5 (4.0)

Adults> 16 (38.6, 25.4–51.8)

Unspecified Unspecified

126 (126)

Pleural biopsy (126), pleural fluid specimens (126)

Liquid media DST

23

Feliciano CS [37]

2018

Brazil, Mozambique

Clinical

22 (75.9)

6 (20.7)

NR

Cross-sectional Unspecified

29 (29)

NR (29)

Solid media DST

24

Giang do C [38]

2015

Vietnam

Clinical

98 (65.3)

0 (0)

Children< 15 (18.5 months, 5–170 months)

Prospective Consecutive

150 (29)

Sputum (79), Gastric fluid (215), CSF (3), Pleural fluid (4), Cervical lymphadenopathic pus (1)

Liquid media DST

25

Gu Y [39]

2015

China

Clinical

28 (46.7)

NR

Median 39.7, IQR 19.5–74.6

Prospective Unspecified

60 (24)

Pus specimens (60)

Liquid media DST

26

Guenaoui K [40]

2016

France

Laboratory

35 (0.7)

NR

NR

Prospective Unspecified

50 (50)

Sputum (50)

Liquid DST

27

Helb D [41]

2010

Uganda

Clinical

38 (59.3)

20 (31.3)

Median 34, IQR 18–60

Retrospective Consecutive

64 (64)

Sputum (64)

DST

28

Hillemann D [42]

2011

German

Laboratory

NR

NR

NR

Unspecified Consecutive

521 (29)

Urine (91), gastric aspirate (30), tissue (245), pleural fluid (113), CSF (19), stool (23)

Liquid media DST

29

Huang H [43]

2018

China

Laboratory

NR

NR

NR

Retrospective Unspecified

2910 (1066)

NR

Liquid media DST

30

Huh HJ [44]

2014

South Korea

Clinical

197 (65.7)

1 (0.3)

Median 58, IQR 18–93

Retrospective Unspecified

300 (98)

Sputum (264), Bronchial washing or BAL (39)

Solid and liquid media DST

31

Hu P [45]

2014

China

Laboratory

1037 (76.7)

NR

3.2% < 20, 96.8% ≥ 20

Unspecified Consecutive

1352 (332)

Sputum (1352)

Solid media DST

32

Jin YH [46]

2017

China

Clinical

59 (54.1)

NR

Median 48.6, IQR 24.0–73.1

Unspecified Unspecified

109 (48)

Pus (48)

Liquid media DST

33

Kawkitinarong K [47]

2017

Thailand

Clinical

284 (58.6)

128 (25.9)

Median 41, IQR 30.8–54.3

Prospective Unspecified

521 (228)

Pulmonary specimens (228)

DST

34

Khalil KF [48]

2015

Pakistan

Clinical

36 (38.7)

0 (0)

> 16, 19.5–57.6

Unspecified Consecutive

93 (93)

BAL (93)

Solid media DST

35

Kim CH [49]

2014

South Korea

Clinical

104 (60.8)

1 (0.6)

Median 58.6, IQR 41.02–76.18

Retrospective Unspecified

171 (26)

Pulmonary (160), Non-pulmonary (38) specimens

Solid media DST

36

Kim CH [50]

2015

South Korea

Clinical

217 (56.7)

1 (0.3)

Median 56.31, IQR 38.43–74.18

Retrospective Convenience

383 (444)

Sputum (176), Bronchial washes (225), BAL (4); Pleural fluid (36), Tissue (1), Pericardial fluid (1), Lymph node (1)

Solid media DST

37

Kim MJ [51]

2015

South Korea

Laboratory

NR

NR

NR

Unspecified Convenience

52 (45)

Sputum (36), bronchial washing (10), pleural fluid (3), pleural mass (1), urine (2)

Liquid media DST

38

Kim SY [52]

2012

South Korea

Clinical

NR

NR

NR

Unspecified Consecutive

71 (62)

Sputum (71)

Solid and liquid DST

39

Kim YW [53]

2015

South Korea

Clinical

761 (53.3)

12 (0.8)

Median 59, IQR 0–99

Retrospective Consecutive

1429 (1540)

LN and tissue/pus (397), body fluid (469), CSF (254), joint fluid (283), urine (106), others (31)

Solid media DST

40

Kim YW [54]

2015

South Korea

Clinical

196 (61.1)

NR

Median 56, IQR 38–71

Retrospective Consecutive

321 (321)

Sputum (321)

DST

41

Kokuto H [55]

2015

Japan

Clinical

51 (54.8)

0 (0)

Adult≥20 (59.6, 45.0–75.0)

Retrospective Convenience

93 (56)

fecal specimens (93)

DST

42

Kostera J [56]

2018

Bangladesh

Clinical

NR

NR

NR

Unspecified Unspecified

132 (122)

Sputum (122)

Liquid media DST

43

Kurbaniyazova G [57]

2017

Kyrgyzstan

Laboratory

NR

NR

Adult≥18

Retrospective Unspecified

2734 (364) (414)

NR

Solid and liquid media DST

44

Kurbatova EV [58]

2013

Russia

Clinical

NR

NR

Adults≥18

Unspecified Consecutive

201 (99)

Sputum (201)

Solid and liquid media DST

45

Kwak N [59]

2013

South Korea

Clinical

426 (62.5)

5 (0.7)

Median 61, IQR 47.5–73.0

Retrospective Unspecified

681 (127)

Sputum (127)

Solid media DST

46

Lawn SD [60]

2011

South Africa

Clinical

162 (34.6)

468 (100)

Adults≥18 (33.6, 27.8–40.7)

Prospective Consecutive

468 (55)

Sputum (468)

Liquid media DST

47

Lee HY [61]

2013

South Korea

Clinical

78 (59.1)

1 (0.8)

Median 54.0, IQR 18–90

Retrospective Unspecified

132 (132)

Bronchoscopy specimens (132)

Ogawa media DST

48

Li Q [62]

2016

China

Laboratory

NR

NR

NR

Unspecified Consecutive

1973 (449)

Sputum (449)

Liquid media DST

49

Li Y [63]

2017

China

Laboratory

251 (60.6)

NR

Median 48.5, IQR 38.3–58.7

Unspecified Consecutive

420 (59)

Extra-pulmonary specimens (59)

Solid media DST

50

Liu X [64]

2015

China

Clinical

NR

NR

NR

Unspecified Unspecified

134 (44)

Pleural biopsy and pleural fluid specimens (100)

Liquid media DST

51

Lorent N [65]

2015

Cambodia

Clinical

160 (53.5)

189 (64.5)

Median 43, IQR 34–52

Prospective Consecutive

299 (102)

Sputum (102)

Solid media DST

52

Luetkemeyer AF [66]

2016

USA South Africa Brazil

Laboratory

446 (45.0)

617 (62.2)

Median 46, IQR 35–64

Unspecified Unspecified

992 (194)

Sputum (2)

DST

53

Metcalfe JZ [67]

2016

Zimbabwe

Clinical

216 (61.4)

238 (67.6)

Median 36.3, IQR 29.0–44.4

Prospective Consecutive

352 (161)

Sputum (161)

Solid and liquid media DST

54

Mokaddas E [68]

2015

Kuwait

Laboratory

NR

NR

NR

Unspecified Unspecified

452 (452)

Sputum (287), FNA (66), pus (58), pleural fluid (14), tissue (10), other sterile fluids (8), urine (5), CSF (2), stool (2).

Liquid media DST

55

Moon HW [69]

2015

South Korea

Clinical

NR

NR

NR

Unspecified Unspecified

100 (100)

Respiratory specimens (100)

DST

56

Moure R [70]

2011

Spain

Clinical

NR

NR

NR

Retrospective Unspecified

122 (85)

Sputum (92), BA (12), pulmonary biopsy (1); pleural fluid (4), gastric aspirate (5), urine (2), stool (1),cerebrospinal fluid (3), ascitic fluid (2), lymph node aspirate (1), skin biopsy (1), mammary abscess (1)

DST

57

Mwanza W [71]

2018

Zambia

Laboratory

NR

NR

NR

Unspecified Consecutive

1070 (24)

NR (24)

Liquid media DST

58

Myneedu VP [72]

2014

India

Laboratory

NR

NR

NR

Unspecified Unspecified

134 (88)

Sputum (134)

Liquid media DST

59

N’guessan K [73]

2014

Cote d’Ivoire

Clinical

91 (75.8)

NR

Median 34.2, IQR 24.1–44.3

Unspecified Unspecified

120 (29)

Sputum (120)

Liquid media DST

60

N’Guessan K [74]

2018

Côte d’Ivoire

Clinical

715 (65.3)

130 (12)

Median 33, IQR 18–80

Cross-sectional Consecutive

1095 (162)

Sputum (162)

Liquid media DST

61

Nikolayevskyy V [75]

2018

Ukraine

Clinical

2393 (68.8)

1265 (36.4)

Median 38.3, IQR 27–51.6

Retrospective Unspecified

3478 (3167)

Pulmonary specimens (3167)

Solid and liquid media DST

62

Nicol MP [76]

2011

South Africa

Clinical

250 (55.3)

108 (23.9)

Children≤15 (19.4 months, 11.1–46.2 months)

Prospective Consecutive

452 (77)

Sputum (452)

DST

63

O’Grady J [77]

2012

Zambia

Clinical

446 (50.6)

595 (67.5)

Adults> 15 (35, 28–43)

Prospective Unspecified

881 (96)

Sputum (881)

Liquid media DST

64

Ou X [78]

2014

China

Laboratory

1741 (70.9)

NR

NR

Unspecified Consecutive

2454 (616)

Sputum (2454)

Solid media DST

65

Ozkutuk N [79]

2014

Turkey

Laboratory

NR

NR

NR

Unspecified Unspecified

2639 (133)

Sputum (721), BAL (757), gastric fluid (94), endotracheal aspirates (30), transtracheal aspirate (9); urine (341), pleural fluid (232), tissue (176), CSF (111), abscesses (94), peritoneal fluid (42), pericardial fluid (18), joint fluid (7), other (7)

Liquid media DST

66

Pan X [80]

2018

China

Clinical

120 (63.2)

NR

Median 46.7, IQR 16–84

Prospective Unspecified

190 (62)

Sputum,BAL (62)

DST

67

Pang Y [81]

2014

China

Clinical

128

NR

Children< 14

Prospective Consecutive

211 (10)

Gastric lavage aspirates (211)

Liquid media DST

68

Park KS [82]

2013

South Korea

Clinical

NR

NR

NR

Prospective Consecutive

320 (19)

Respiratory specimens (320)

Liquid media DST

69

Pimkina E [83]

2015

Lithuania

Laboratory

559 (70.6)

NR

Age ≥ 15

Retrospective Unspecified

791 (264)

Respiratory specimens (264)

Solid or liquid media DST

70

Pinyopornpanish K [84]

2015

Thailand

Clinical

34 (59.6)

15 (26.3)

≥15 (55.6, 35.5–75.7)

Cross-sectional Consecutive

57 (43)

Sputum(57)

Liquid media DST

71

Rachow A [85]

2011

Tanzania

Clinical

141 (48.3)

172 (58.9)

Median 39.2

Unspecified Consecutive

292 (61)

Sputum (292)

Liquid media DST

72

Rahman A [86]

2016

Bangladesh

Clinical

NR

NR

NR

Unspecified Unspecified

92 (92)

Sputum (92)

Liquid media DST

73

Raizada N [87]

2014

India

Clinical

2339 (50.8)

NR

Children< 14

Prospective Consecutive

4600 (48)

Sputum (4600)

DST

74

Reither K [88]

2015

Tanzania Uganda

Clinical

219 (45.6)

197 (43.7)

Children< 16 (5.6, 2.0–9.8)

Prospective Consecutive

451 (25)

Sputum (451)

Liquid media DST

75

Rice JP [89]

2017

America

Laboratory

NR

NR

Median 50, IQR 35–60

Retrospective Unspecified

637 (120)

Sputum (120)

Liquid media DST

76

Sharma SK [90]

2015

India

Laboratory

909 (64.7)

NR

Median 37.5, IQR 19.4–55.6

Unspecified Consecutive

1406 (422)

Respiratory specimens (422)

Solid and liquid media DST

77

Sharma SK [91]

2017

India

Laboratory

1405 (55.6)

NR

Median 35.29, IQR 20–50

Unspecified Convenient

2468 (328)

Extra-pulmonary specimens (328)

Liquid media DST

78

Singh UB [92]

2016

India

Clinical

589 (51.4)

NR

NR

Prospective Unspecified

1145 (72)

Pulmonary and Extra-pulmonary specimens (132)

Liquid media DST

79

Soeroto AY [93]

2019

Indonesia

Clinical

193 (56.9)

5 (1.5)

Median 38.2, IQR 25.7–50.7

Retrospective Unspecified

339 (158)

NR (158)

DST

80

Ssengooba W [94]

2014

Uganda

Clinical

155 (36.6)

424 (100)

Median 32, IQR 32–34

Prospective Unspecified

424 (9)

Sputum (424)

Liquid media DST

81

Strydom K [95]

2015

South Africa

Laboratory

NR

NR

NR

Retrospective Consecutive

120 (115)

Sputum (120)

Liquid media DST

82

Tahseen S [96]

2016

Pakistan

Clinical

1078 (54.3)

NR

Median 33

Cross-sectional Consecutive

1984 (1533)

Sputum (1533)

Solid media DST

83

Theron G [97]

2011

South Africa

Clinical

325 (67.7)

130 (27.1)

Adults≥18 (36, 18–83)

Unspecified Consecutive

480 (157)

Sputum (480)

Liquid media DST

84

Tsuyuguchi K [98]

2017

Japan

Clinical

146 (61.6)

NR

Median 65.2, IQR 23–94

Prospective Consecutive

237 (201)

Sputum (201)

Solid media DST

85

Ullah I [99]

2017

Pakistan

Clinical

130 (48.9)

0 (0)

Median 34, IQR 3–80

Unspecified Unspecified

266 (88)

Extra-pulmonary specimens (88)

DST

86

Vadwai V [100]

2011

India

Clinical

251 (45.9)

16 (2.9)

Median 37, IQR 8 months-94

Unspecified Consecutive

547 (125)

Biopsy (284), pus (147), body fluids (93), CSF (23)

Solid and liquid media DST

87

van Kampen SC [101]

2015

Kazakhstan

Laboratory

NR

52(0.9)

NR

Prospective Consecutive

5611 (1054)

Sputum (5611)

Solid or liquid media DST

88

van Kampen SC [102]

2015

Indonesia

Clinical

872 (60.5), missing 15(1.0)

35 (2.4)

0.5% < 15, 97.7% ≥ 16, 1.8% missing

Unspecified Consecutive

1442 (339)

Sputum (1442)

DST

89

Wang G [103]

2017

China

Clinical

NR

NR

NR

Prospective Undefined

1461 (538)

Pulmonary specimens (1063), extra-pulmonary specimens (398)

Solid media DST

90

Wang G [104]

2019

China

Clinical

192 (65.75)

0 (0)

Median 42, IQR 14–89

Prospective Consecutive

292 (119)

Sputum (90), pleural fluid (29)

Solid or liquid media DST

91

Williamson DA [105]

2012

New Zealand

Clinical

NR

NR

NR

Unspecified Unspecified

169 (14)

Respiratory specimens (89); extra-pulmonary specimens (9), MGIT liquid culture vials (71)

Liquid media DST

92

Yin QQ [106]

2014

China

Clinical

141 (55.3)

NR

Children≤18 (6.1, 0.3–15.3)

Unspecified Unspecified

255 (21)

BALF (255)

Liquid media DST

93

Yuan M [107]

2016

China

Clinical

NR

0 (0)

NR

Retrospective Unspecified

328 (90)

Extra-pulmonary specimens (90)

DST

94

Zar HJ [108]

2012

South Africa

Clinical

294 (55.0)

117 (21.9)

Children< 15 (19.0 months, 11.2–38.3 months)

Unspecified Consecutive

535 (125)

Nasopharyngeal specimens, sputum (535)

Liquid culture

95

Zar HJ [109]

2014

South Africa

Clinical

181 (47)

31 (8)

Children< 15 (38.3 months, 21.2–56.5 months)

Prospective Consecutive

384 (18)

Sputum (309), Nasopharyngeal aspirate specimens (309)

DST

96

Zetola NM [110]

2014

Botswana

Clinical

221 (59.7)

279 (59.4)

Adult≥18 (37, 31–44)

Retrospective Consecutive

370 (370)

Sputum (370)

DST

97

Zhang AM [111]

2016

China

Clinical

65 (59.6)

0 (0)

Children≤14

Unspecified Unspecified

109 (21)

Pulmonary and Extra-pulmonary specimens (21)

Liquid media DST

  1. Sample selection: Study units selected prospectively, or retrospectively from existing samples; Consecutive, random or convenience sampling method. ‘Unspecified’ refers to studies where there was no clear indication how the study participants were chosen. Solid media culture(Löwensten-Jensen), liquid media culture (Bactec MGIT 960)