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Table 5 HPLC-MS analyses of the active desert actinobacterial strain

From: Spore forming Actinobacterial diversity of Cholistan Desert Pakistan: Polyphasic taxonomy, antimicrobial potential and chemical profiling

Strains

Thin Layer Chromatography (TLC) Profile

HPLC-Retention time (tR/min)

(+) and (−)-ESI-MS: (m/z)

Molecular Weights

Activity against MRSA

Suggested Streptomyces metabolites from AntiBase 2017

(Additional files 15 and 20)

UV Visualization

Staining with Anisaldehyde/H2SO4

AFD2

254 nm

4 bands

2green,

1purple,

2yellow

6.38

11.03

12.57

113 [M + H]+, 111[M-H]

208 [M + H]+, 206 [M-H]

137 [M + H]+, 135 [M-H]

112

207

136

17 mm zone of inhibition against MRSA A5;32 mm zone of inhibition against MRSA A11

MW = 112: Emimycin, 3,5-Dimethyl-3-oxol-2-on, Uracil, Enimycin.

MW = 207: Triacsin C, Triacsin D, Streptazolin, 2-(2-Hydroxypropionyl)acetanilide, Aeruginol, 7-Deoxyechinosporin.

MW = 136: Pyrrole-3-yl-2-propenamide, Anthranilamide, Octalactin C.

366 nm

2 bands

AFD4

254 nm

3 bands

2 purple bands, 1 light blue band, 1 yellow band, 1 green band

10.23

12.22

12.60

211 [M + H]+, 209 [M-H]

146 [M + H]+

137 [M + H]+, 135 [M-H]

210

145

136

9 mm zone of inhibition against MRSA A11;18 mm zone of inhibition against MRSA A5

MW = 210: 1-Methoxyphenazine, 1-Acetyl-β-carboline

MW = 146: Indole-3-carbaldehyde

MW = 136: Pyrrole-3-yl-2-propenamide, Anthranilamide, Octalactin C.

366 nm

2 bands

AFD7

254 nm

4 bands

2 green bands, 2 yellow bands, 1 blue band

3.83

4.50

5.77

7.10

10.24

11.07

11.38

11.91

13.16

15.05

16.72

153 [M + H]+, 151 [M-H]

202 [M + H]+

261 [M + H]+, 259 [M-H]

115 [M + H]+, 113 [M-H]

211 [M + H]+

145 [M + H]+, 143 [M-H]

424 [M + H]+, 422 [M-H]

407 [M + H]+, 405 [M-H]

494 [M + H]+

231 [M + H]+, 229 [M-H]

390 [M + H]+, 388 [M-H]

223 [M + H]+, 245 [M + Na]+

152

201

260

114

210

144

423

406

493

230

389

222

20 mm zone of inhibition against MRSA A11; 25 mm zone of inhibition against MRSA A7

MW = 152: Guanazolo, Orsellin-aldehyde, MY3–469, Xanthine.

MW = 260: Cyclo(L-Tyr-L-Pro), VibrindoleA

MW = 114: 4-Hydroxy-5-methyl-furan-3-one

MW = 210: 1-Methoxyphenazine, 1-Acetyl-β-carboline

MW = 144: Pentenomycin I, 4-Epipentenomycin I

MW = 423: Fibrostatin B, A9145 A, 6-Amino-9 [(aminocarbonyl)amino]-1-(6-amino-9H-purin-9-yl)-1,5,6,7,8,9- hexadeoxy-decafuranuronamide

MW = 389: Hatomamicin, SF-2809-I

366 nm

4 bands

AFD8

254 nm

4 bands

4 blue bands

9.07

13.42

14.94

15.58

153 [M + H]+, 151 [M-H]

257 [M + H]+, 255 [M-H]

225 [M + H]+

181 [M + H]+

152

256

224

180

12 mm zone of inhibition against MRSA A12;17 mm zone of inhibition against MRSA A1

MW = 152: o Hydroxyphenylacetic acid, BE-39907 A2

MW = 256: Phenacein, Albonoursin, N-Isobutyrylpyrrothine, 2,9-Dihydroxyphenazine-1-carboxylic acid

366 nm

3 bands

AFD10

254 nm

4 bands

3 yellow bands, 2 brown bands

9.90

12.60

15.61

19.42

211 [M + H]+

137 [M + H]+,135 [M-H]

401 [M + H]+, 399 [M-H]

475 [M + H]+, 473 [M-H]

210

136

400

474

17 mm zone of inhibition against MRSA A7; 20 mm zone of inhibition against MRSA A2

MW = 210: 1-Methoxyphenazine, 1-Acetyl-β-carboline.

MW = 136: Pyrrole-3-yl-2-propenamide, Anthranilamide, Octalactin C.

MW = 400: Daunomycinol, Furaquinocin G, Daidzein-7-α-l-rhamnoside, Oxopropaline-E, 2 11-A.

MW = 474: N-Ethyloxytetracycline, KS-619-1.

366 nm

1 band

AFD12

254 nm

3 bands

1 dark yellow band, 1 pink band, 1 green band

3.70

4.36

6.43

12.50

16.06

-

160 [M + H]+,158 [M-H]

110 [M-H]

205 [M-H]

137 [M + H]+, 135 [M-H]

211 [M + H]+

-

159

111

206

136

210

11 mm zone of inhibition against MRSA A7; 15 mm zone of inhibition against MRSA A5

MW = 159: 4-(Hydroxymethyl)quinolone, Quinazolinamine

MW = 136: Pyrrole-3-yl-2-propenamide, Anthranilamide, Octalactin C.

MW = 210: Nikkomycin E, (4R)-Thiolactomycin, Cyanomycin, 2-Amino-4-hydroxy-3-methyl-4-(3-pyridyl)butanoic acid.

366 nm

2 bands

AFD26

254 nm

4 bands

1 brown bands, 1 purple band, 1 light blue band, 1 greenish blue band

.48

6.32

6.38

9.49

10.85

12.23

17.43

1052 [M + H]+??

113 [M + H]+, 111 [M-H]

164 [M + H]+, 162 [M-H]

164 [M + H]+, 162 [M-H]

164 [M + H]+, 162 [M-H]

317 [M + H]+

391 [M + H]+

112

163

163

163

316

390

10 mm zone of inhibition against MRSA A1; 15 mm zone of inhibition against MRSA A7

MW = 112: Emimycin, 3,5-Dimethyl-3-oxol-2-on, Uracil, Enimycin.

MW = 163: L-β-(3-Hydroxyureido)-alanine, Homoalanosine, β-Phenylethylacetamide, 2-N-Hydroxy-3,4-dihydroisoquinoline-1-one, Streptazone D, 2-Amino-4-hydroxy-pterin, 6-Hydroxy-isatin, Dihydroabikoviromycin, 3-Nitro-1H-indazole, Kitasatodine

MW = 316: 17927-D, Boxazomycin A, 1 Isobutyroxymethyl cyclohex-1(6)-ene-2,3,4,5-tetrol-2-isobutyrate.

MW = 390: SF-2330, Arizonin C3.

366 nm

2 bands

  1. For details, see Supplementary Information (Figure S3-S20)