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Table 2 Composition of the annotated high impact SNVs in the persistent groups A (Table A) and B (Table B) in Listeria monocytogenes strains isolated from an industrial slaughterhouse over four weeks with their position and the altered nucleotide according to the references of the respective persistent groups

From: Genomic characterization of Listeria monocytogenes isolates reveals that their persistence in a pig slaughterhouse is linked to the presence of benzalkonium chloride resistance genes

SNVs

REF-ALTa

Position

Protein inference

A)

 H28

A-T

2,365,617

holin

 H2

C-A

2,366,926

protein gp20

 H6

A-C

2,370,180

Protein gp17

 H11

G-T

2,371,838

putative tape-measure

 H12

G-T

2,376,360

Protein gp15

 H13

A-T

2,378,030

Portein gp11

 H7

G-C

2,383,240

putative portal protein

 H8

G-C

2,387,299

Protein gp66

 H23

T-C

2,396,331

Protein gp43

 H14

C-A

1,134,999

Cadmium resistance protein

 H20

T-A

2,268,215

putative peptidoglycan bound protein

(LPXTG motif)

 H3

G-A

2,397,250

Hypothetical protein

 H21

G-A

2,398,304

Hypothetical protein

 H4

C-A

2,399,019

Hypothetical protein

 H22

T-A

2,435,024

Hypothetical protein

 H24

T-C

2,725,852

Hypothetical protein

 H29

C-T

2,806,268

Hypothetical protein

 H30

C-T

2,862,889

Hypothetical protein

 H25

A-G

2,928,670

Hypothetical protein

 H9

G-C

2,388,916

Hypothetical protein

 H5

T-C

2,389,387

Hypothetical protein

 H19

G-A

1,062,031

Hypothetical protein

 H26

G-T

1,106,182

Hypothetical protein

 H27

G-T

1,683,477

Hypothetical protein

 H15

A-T

2,363,489

Hypothetical protein

B)

 H1

T-C

13,003,993

DUF3310 domain-containingprotein

 H2

G-T

1,307,219

Phage tail measure protein

 H6

T-A

1,314,894

Phage tail tape measure protein

 H23

T-C

1,300,393

VRR-NUC domain-containing protein

 H11

A-T

2,467,036

Phage antirepressor Ant

 H12

C-G

2,473,719

recombinase family protein

 H15

G-A

1,323,444

DUF3800 domain-containing protein

 H16

T-A

447,408

Polysaccharide deacetylase

 H17

T-A

463,360

Internalin A

 H18

T-A

465,225

Internalin

 H19

C-A

2,932,396

6-phospho-beta-glucosidase

 H21

T-A

1,146,752

dTDP-4-dehydrorhamnose reductase

 H22

T-A

2,347,583

Oligoendopeptidase F

 H26

G-T

431,637

alpha-mannosidase

 H27

G-T

972,616

GntR family transcriptional regulator

 H8

T-G

2,432,776

Competence protein Comk

 H13

G-T

1,307,219

Peptidase

 H5

G-A

2,465,545

Hypothetical protein

 H9

G-T

2,445,638

Hypothetical protein

 H20

G-A

2,940,879

Hypothetical protein

 H24

A-C

2,458,383

Hypothetical protein

 H25

A-G

79,636

Hypothetical protein

 H28

A-T

1,430,257

Hypothetical protein

 H29

A-T

444,637

Hypothetical protein

 H10

G-T

2,461,077

hypothetical protein

 H14

G-T

2,445,638

Hypothetical protein

  1. aREF-ALT Reference-Alteration: Definition of the nucleotides present in the reference genome and their substitution after the mutation in the genomes of this study
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BMC Microbiology

ISSN: 1471-2180

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