Table 1 Main genomic features of the APEC strain E. coli ST117
Genome size | 5,028,456 bp | Ā | Ā | Ā |
Number of coding sequences | 4840 | Ā | Ā | Ā |
Number of contigs (with PEGs) | 135 | Ā | Ā | Ā |
GC % | 50.4% | Ā | Ā | Ā |
R-genes (genotype) | V-genes (genotype) | Replicons | MLST-type | Serotype |
aadA1 (aminoglycoside) sul1 (sulphonamide) | iroN, sitA, feoB,ireA,irp-2, iucD,vjj, ipfA (siderophore) tsh (serin protease autotransporter) iss (increased serum survival) hlyF (haemolysin) fimH, fliH, csgA,papA, papC and papEF (flagellar proteins) fliC, ompT, PAI (cft073) (miscellaneous structures) pstB (acid shock) vac, vat, astA (toxin-associated) fyuA, gimB, malI, etsA, etsB (PAI-associated) upaG, uvrY (UPEC genes associated) frz (oxygen-restricted) | IncFIB IncFII | ST117 | O83:H4 |