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Table 1 Amplification of 10 loci from panel A as this has been established (http://mlva.u-psud.fr//MLVAnet/spip.php?rubrique50)

From: Genotyping of Coxiella burnetii in sheep and goat abortion samples

ID Host Source Location Year Ct MLVA MST type
Loci targeted Type
ms01 ms03 ms07 ms12 ms20 ms21 ms22 ms26 ms30 ms36
27 Sheep Stomach content Grevena 2015 27.1 0 0 0 -2 3 0 −7 N/A 0 3 A  
45/2 Sheep Stomach content Elassona 2015 28.6 0 0 0 −2 3 0 −7 N/A 0 3 A  
85/1 Sheep Cotyledon Kalavryta 2014 29.9 0 0 0 −2 3 0 −7 N/A 0 3 A  
85/1 Sheep Stomach content Kalavryta 2014 27.4 0 0 0 −2 3 0 −7 N/A 0 3 A  
92 Sheep Liver Edessa 2015 28.3 0 0 0 −2 3 0 −7 N/A 0 3 A  
113 Sheep Stomach content Thessalonika 2015 23.5 0 0 0 −2 3 0 −4 N/A 0 3 B 32
152/2 Sheep Cotyledon Patra 2016 29.1 0 0 0 −2 3 0 −7 N/A 0 3 A  
156/B Sheep Stomach content Aridea 2016 28.4 0 0 0 −2 3 0 −7 N/A 0 3 A  
173 Sheep Liver Elassona 2016 24.6 0 0 0 −2 3 0 −7 N/A 0 3 A 32
173 Sheep Stomach content Elassona 2016 23.7 0 0 0 −2 3 0 −7 N/A 0 3 A 32
14/1 Sheep Cotyledon Larissa 2017 24.2 0 0 0 −2 3 0 1 N/A −1 9 C 32
  1. ID Sample Identification number, Ct Real-time PCR cycle threshold, N/A not determined DNA. The genotypic designation of Nine Mile (4–7–8-8-15-6-6-4-12-4, for the corresponding loci) was used to compare our findings. Where “0”, we ended up with the same band size during the MLVA typing; differences either these are “-” or “+” correspond to differences in number of repeats among our samples and Nine Mile. MLVA and MST genotypes were confirmed in C. burnetii 2014 cooperative database (http://mlva.u-psud.fr/mlvav4/genotyping/view.php) (http://ifr48.timone.univ-mrs.fr/mst/coxiella_burnetii/strains.html)