Target
|
Sequence
|
ComPrim
|
#nt
|
Tm (°C)
|
Fungi (%)
|
Alv. (%)
|
Rhiz. (%)
|
Stram. (%)
|
Tel. (%)
|
---|
Alveolata
|
gtcgctcctaccgattga
|
nu-SSU-1647-3ˊ
|
16
|
50.3
|
0.08
|
52.6
|
6.3
|
0.9
|
3.3
|
Rhizaria
|
ttaacgaacgagacctcga
|
nu-SSU-1333-5ˊ
|
15
|
48.9
|
0
|
0
|
24.3
|
0.3
|
0
|
Stramenopiles
|
tcgcacctaccgattgaa
|
nu-SSU-1647-3ˊ
|
14
|
48.3
|
0
|
0.5
|
0.3
|
77.1
|
1.7
|
Telonema
|
gaccttaacctactaaatagtta
|
nu-SSU-1333-5ˊ
|
4
|
48.1
|
0
|
0.3
|
0
|
0
|
39.2
|
- Fungal and non-fungal eukaryotic sequence coverage rate tested by in silico analysis
- ComPrim Sequence complement to the indicated primer
- #nt Number of identical nt’s shared by primer and blocking oligo sequence
- Tm Annealing temperature
- %Fungi Coverage rate for fungal sequences
- %Alv. Coverage rate for Alveolata sequences
- %Rhiz. Coverage rate for Rhizaria sequences
- %Stram. Coverage rate for Stramenopiles sequences
- %Tel. Coverage rate for Telonema sequences