| Serovars | Variants | Total | ||||||
---|---|---|---|---|---|---|---|---|---|
Intragenic | Intergenic | ||||||||
sSNP | nsSNP | nsInDel | rSNP | rInDel | SNP | InDel | |||
Homoplastic | Dublin versus all a | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Enteritidis versus Dublin b | 0 | 0 | 0 | 3948 | 93 | 439 | 117 | 4597 | |
Pullorum + Gallinarum versus Enteritidis b | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | |
Pullorum versus Gallinarum a | 1 | 1 | 5 | 6 | 113 | 4 | 47 | 117 | |
Gallinarum versus Pullorum | 0 | 0 | 8 | 236 | 84 | 16 | 38 | 382 | |
Non-homoplastic | Dublin versus all a | 3129 | 819 | 87 | 0 | 0 | 438 | 115 | 4588 |
Enteritidis versus Dublin b | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 3 | |
Pullorum + Gallinarum versus Enteritidis b | 0 | 0 | 31 | 0 | 0 | 0 | 5 | 36 | |
Pullorum versus Gallinarum a | 95 | 139 | 81 | 0 | 0 | 15 | 27 | 357 | |
Gallinarum versus Pullorum a | 5 | 1 | 108 | 0 | 0 | 3 | 38 | 155 |