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Table 2 List of proteins identified in nucleoid fractions and predicted to be DNA/RNA binding proteins

From: Identification of nucleoid associated proteins (NAPs) under oxidative stress in Staphylococcus aureus

Category Phase Genes
Transcription factors Log phase codY, graR, rex , rot , sarA , sarH1 , sarR , spxA , srrA, vraR
Stationary phase ahrC , codY, graR , mgrA , nreC , pyrR , rocA, saeR , sarA , sarR , sarH1 , sarV , sarZ , srrA, tcaR , vraR, vicR
Oxidative stress sarV , sarA , ctsR , rot , warR, msrR
Proteins involved in transcription, translation, replication, and DNA repair Log phase fus, efp , tsf, tufA, end4, ermA, infA , nusG, pnpA, recA, rnc , rnh3 , rpoA, rpoB, rpoC, rpoE , uvrC , xerD
  Stationary phase lig, dnaN, fus, efp , tsf, tufA, gyrB, hsdR, infA , infB, infC, mfd , nusG , parC, parE , pnpA, rnc , rnj1 , rnj2, rpoA, rpoB, rpoC, rpoE , gidB, ruvA , ssb , topA , Y1885
  Oxidative stress tuf, infC , ftsZ, gpsB , rpoZ , nusG, rpoB, infB, recA, deaD, rpoD, sepF , top1, rnhB , dnlJ , parE, parC
  1. E. coli major NAP, HU was eliminated from the list.
  2. Underline: csNAPs
  3. The number of Log phase and Stationary phase are from Ohniwa RL et al., 2011 [26]