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Table 2 List of proteins identified in nucleoid fractions and predicted to be DNA/RNA binding proteins

From: Identification of nucleoid associated proteins (NAPs) under oxidative stress in Staphylococcus aureus

Category

Phase

Genes

Transcription factors

Log phase

codY, graR, rex , rot , sarA , sarH1 , sarR , spxA , srrA, vraR

Stationary phase

ahrC , codY, graR , mgrA , nreC , pyrR , rocA, saeR , sarA , sarR , sarH1 , sarV , sarZ , srrA, tcaR , vraR, vicR

Oxidative stress

sarV , sarA , ctsR , rot , warR, msrR

Proteins involved in transcription, translation, replication, and DNA repair

Log phase

fus, efp , tsf, tufA, end4, ermA, infA , nusG, pnpA, recA, rnc , rnh3 , rpoA, rpoB, rpoC, rpoE , uvrC , xerD

 

Stationary phase

lig, dnaN, fus, efp , tsf, tufA, gyrB, hsdR, infA , infB, infC, mfd , nusG , parC, parE , pnpA, rnc , rnj1 , rnj2, rpoA, rpoB, rpoC, rpoE , gidB, ruvA , ssb , topA , Y1885

 

Oxidative stress

tuf, infC , ftsZ, gpsB , rpoZ , nusG, rpoB, infB, recA, deaD, rpoD, sepF , top1, rnhB , dnlJ , parE, parC

  1. E. coli major NAP, HU was eliminated from the list.
  2. Underline: csNAPs
  3. The number of Log phase and Stationary phase are from Ohniwa RL et al., 2011 [26]
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BMC Microbiology

ISSN: 1471-2180

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