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Table 2 Data analysis of clinical samples

From: Towards diagnostic metagenomics of Campylobacter in fecal samples

Infection load (CFU/ml) Kraken raw Kraken final CLARK raw CLARK final Host contamination %
9.2 × 104 757 10 155 81 0.72
5.0 × 106 1940 295 932 159 1.26
2.2 × 107 5129 848 5034 3126 0.10
2.6 × 107 3917 565 3667 2170 0.27
1.0 × 108 3286 362 3122 2048 0.18
2.0 × 108 42,412 20 5625 4146 37.59
4.6 × 108 13,288 2609 13,141 9787 0.12
1.0 × 109 199,512 3439 199,219 14,872 0.15