From: DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli
Genes upregulated during growth in J82 BECs | Protein | Number of genes in operon | rLogFC |
---|---|---|---|
trpR | Trp operon repressor | 1 | 2,332854642 |
yaaU | metabolite transport protein YaaU | 1 | 2,283687208 |
UTI89_C4979 | hypothetical protein (Transposase) | 1 | 2,249895676 |
UTI89_C4140 | hypothetical protein | 1 | 2,15066842 |
rluA | 23S rRNA/tRNA pseudouridine synthase A | 1 | 2,07065298 |
pepQ; yigZ | Proline dipeptidase; hypothetical protein | 2 | 1,975901548 |
UTI89_C5123; UTI89_C5124 | tail component of prophage CP-933Â K; tail component of prophage CP-933Â K | 2 | 1,86063772 |
lplA | lipoate-protein ligase A | 1 | 1,852945008 |
yceI | hypothetical protein | 1 | 1,840726794 |
UTI89_C5140 | hypothetical protein | 1 | 1,83941429 |
UTI89_C5136 | hypothetical protein (putative membrane protein) | 1 | 1,837077447 |
UTI89_C5163 | hypothetical protein (transcriptional regulator) | 1 | 1,72527562 |
UTI89_C5093 | hypothetical protein (Phytoene synthase) | 1 | 1,701749646 |
yfdQ2 | hypothetical protein (phage protein) | 1 | 1,699919702 |
deoA | thymidine phosphorylase | 1 | 1,698786977 |
UTI89_C5087; UTI89_C5088 | hypothetical protein (phage protein); hypothetical protein (HNH endonuclease) | 2 | 1,689083782 |
UTI89_C0227 | LysR family transcriptional regulator | 1 | 1,666994808 |
yjjJ | hypothetical protein (transcriptional regulator) | 1 | 1,659851375 |
UTI89_C5141 | hypothetical protein | 1 | 1,65493764 |
yjjK | ABC transporter ATP-binding protein | 1 | 1,65080455 |
deoB; deoD | Phosphopentomutase; purine nucleoside phosphorylase | 2 | 1,637364571 |
UTI89_C5086 | hypothetical protein (putative membrane protein) | 1 | 1,619322431 |
yecH | hypothetical protein | 1 | 1,607068129 |
yafD | hypothetical protein (EEP domain-containing protein) | 1 | 1,587086745 |
UTI89_C5108 | hypothetical protein | 1 | 1,572251909 |
Slt | lytic murein transglycosylase | 1 | 1,55866374 |
UTI89_C5139 | hypothetical protein | 1 | 1,551006847 |
UTI89_C5078 | hypothetical protein | 1 | 1,539466639 |
osmY | periplasmic protein | 1 | 1,536342614 |
UTI89_C5146 | hypothetical protein (membrane protein) | 1 | 1,529533673 |
yjjU; yjjV | hypothetical protein (phospholipase); deoxyribonuclease YjjV (metal-dependent hydrolase) | 2 | 1,525815587 |
dnaC | DNA replication protein DnaC | 1 | 1,525438036 |
UTI89_C3195 | hypothetical protein | 1 | 1,510078684 |
yjjM | hypothetical protein (GntR family transcriptional regulator) | 1 | 1,504013167 |