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Table 5 UTI89 genes upregulated in J82 BECs. BLAST results of hypothetical proteins are represented in parentheses

From: DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli

Genes upregulated during growth in J82 BECs

Protein

Number of genes in operon

rLogFC

trpR

Trp operon repressor

1

2,332854642

yaaU

metabolite transport protein YaaU

1

2,283687208

UTI89_C4979

hypothetical protein (Transposase)

1

2,249895676

UTI89_C4140

hypothetical protein

1

2,15066842

rluA

23S rRNA/tRNA pseudouridine synthase A

1

2,07065298

pepQ;

yigZ

Proline dipeptidase;

hypothetical protein

2

1,975901548

UTI89_C5123; UTI89_C5124

tail component of prophage CP-933 K;

tail component of prophage CP-933 K

2

1,86063772

lplA

lipoate-protein ligase A

1

1,852945008

yceI

hypothetical protein

1

1,840726794

UTI89_C5140

hypothetical protein

1

1,83941429

UTI89_C5136

hypothetical protein (putative membrane protein)

1

1,837077447

UTI89_C5163

hypothetical protein (transcriptional regulator)

1

1,72527562

UTI89_C5093

hypothetical protein (Phytoene synthase)

1

1,701749646

yfdQ2

hypothetical protein (phage protein)

1

1,699919702

deoA

thymidine phosphorylase

1

1,698786977

UTI89_C5087; UTI89_C5088

hypothetical protein (phage protein);

hypothetical protein (HNH endonuclease)

2

1,689083782

UTI89_C0227

LysR family transcriptional regulator

1

1,666994808

yjjJ

hypothetical protein (transcriptional regulator)

1

1,659851375

UTI89_C5141

hypothetical protein

1

1,65493764

yjjK

ABC transporter ATP-binding protein

1

1,65080455

deoB;

deoD

Phosphopentomutase;

purine nucleoside phosphorylase

2

1,637364571

UTI89_C5086

hypothetical protein (putative membrane protein)

1

1,619322431

yecH

hypothetical protein

1

1,607068129

yafD

hypothetical protein (EEP domain-containing protein)

1

1,587086745

UTI89_C5108

hypothetical protein

1

1,572251909

Slt

lytic murein transglycosylase

1

1,55866374

UTI89_C5139

hypothetical protein

1

1,551006847

UTI89_C5078

hypothetical protein

1

1,539466639

osmY

periplasmic protein

1

1,536342614

UTI89_C5146

hypothetical protein (membrane protein)

1

1,529533673

yjjU;

yjjV

hypothetical protein (phospholipase);

deoxyribonuclease YjjV (metal-dependent hydrolase)

2

1,525815587

dnaC

DNA replication protein DnaC

1

1,525438036

UTI89_C3195

hypothetical protein

1

1,510078684

yjjM

hypothetical protein (GntR family transcriptional regulator)

1

1,504013167