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Table 5 UTI89 genes upregulated in J82 BECs. BLAST results of hypothetical proteins are represented in parentheses

From: DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli

Genes upregulated during growth in J82 BECs Protein Number of genes in operon rLogFC
trpR Trp operon repressor 1 2,332854642
yaaU metabolite transport protein YaaU 1 2,283687208
UTI89_C4979 hypothetical protein (Transposase) 1 2,249895676
UTI89_C4140 hypothetical protein 1 2,15066842
rluA 23S rRNA/tRNA pseudouridine synthase A 1 2,07065298
pepQ;
yigZ
Proline dipeptidase;
hypothetical protein
2 1,975901548
UTI89_C5123; UTI89_C5124 tail component of prophage CP-933 K;
tail component of prophage CP-933 K
2 1,86063772
lplA lipoate-protein ligase A 1 1,852945008
yceI hypothetical protein 1 1,840726794
UTI89_C5140 hypothetical protein 1 1,83941429
UTI89_C5136 hypothetical protein (putative membrane protein) 1 1,837077447
UTI89_C5163 hypothetical protein (transcriptional regulator) 1 1,72527562
UTI89_C5093 hypothetical protein (Phytoene synthase) 1 1,701749646
yfdQ2 hypothetical protein (phage protein) 1 1,699919702
deoA thymidine phosphorylase 1 1,698786977
UTI89_C5087; UTI89_C5088 hypothetical protein (phage protein);
hypothetical protein (HNH endonuclease)
2 1,689083782
UTI89_C0227 LysR family transcriptional regulator 1 1,666994808
yjjJ hypothetical protein (transcriptional regulator) 1 1,659851375
UTI89_C5141 hypothetical protein 1 1,65493764
yjjK ABC transporter ATP-binding protein 1 1,65080455
deoB;
deoD
Phosphopentomutase;
purine nucleoside phosphorylase
2 1,637364571
UTI89_C5086 hypothetical protein (putative membrane protein) 1 1,619322431
yecH hypothetical protein 1 1,607068129
yafD hypothetical protein (EEP domain-containing protein) 1 1,587086745
UTI89_C5108 hypothetical protein 1 1,572251909
Slt lytic murein transglycosylase 1 1,55866374
UTI89_C5139 hypothetical protein 1 1,551006847
UTI89_C5078 hypothetical protein 1 1,539466639
osmY periplasmic protein 1 1,536342614
UTI89_C5146 hypothetical protein (membrane protein) 1 1,529533673
yjjU;
yjjV
hypothetical protein (phospholipase);
deoxyribonuclease YjjV (metal-dependent hydrolase)
2 1,525815587
dnaC DNA replication protein DnaC 1 1,525438036
UTI89_C3195 hypothetical protein 1 1,510078684
yjjM hypothetical protein (GntR family transcriptional regulator) 1 1,504013167