Table 3 rLogFC values for genes upregulated in human urine. BLAST results of hypothetical proteins are represented in parentheses

ybdL

Aminotransferase

1

ybdH

Hypothetical protein (oxidoreductase)

1

metE

5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase

1

metR

DNA-binding transcriptional dual regulator for metE and MetH

1

yjaB

Hypothetical protein (acetyltransferase)

1

metA

Homoserine O-succinyltransferase

1

argC ;

argB

N-acetyl-gamma-glutamyl-phosphate reductase;

Acetylglutamate kinase

2

metF

5,10-methylenetetrahydrofolate reductase

1

argE

Acetylornithine deacetylase

1

ilvY

IlvY DNA-binding transcriptional dual regulator

1

argD

bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase

1

yibI

Hypothetical protein

1

artJ

Arginine-binding periplasmic protein 2

1

argG

Argininosuccinate synthase

1

ilvG ;

ilvM

Acetolacetate synthase 2 catalytic subunit; acetolactate synthase 2 regulatory subunit

2

yifB ;

UTI89_C4323

predicted ATP-dependent protease;

hypothetical protein

2

ydcX

Hypothetical protein (membrane protein)

1

UTI89_C2996;

UTI89_C2997;

UTI89_C2998;

yfdN1;

UTI89_C3000

bacteriophage V crossover junction endodeoxyribonuclease;

hypothetical protein;

bacteriophage V DNA adenine methylase;

hypothetical protein;

hypothetical protein

5

Crl

DNA-binding transcriptional regulator Crl

1

potF

putrescine ABC transporter substrate-binding protein

1

metJ

transcriptional repressor protein MetJ

1

yibH

Hypothetical protein (membrane protein)

1

UTI89_C2260

Hypothetical protein

1

UTI89_C0254 ;

UTI89_C0255;

UTI89_C0256

Hypothetical protein;

Hypothetical protein (peptidase C39);

Hypothetical protein

3