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Table 2 Primers used in gene deletion experiments

From: Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands

Primers

Sequence (5’ to 3’)a

For mutagenesis of copR

LPW23977 (copR-UF)

GCTCTAGACCGAAAGGGTTCATTACG

LPW23978 (copR-UR)

TCAGCTTGACCTCGAGCCCCTTCTTCAG

LPW23979 (copR-DF)

GGGGCTCGAGGTCAAGCTGATCCATACC

LPW23980 (copR-DR)

ACATGCATGCTAGCCGTCGAGCAGATC

LPW24342 (copR-IF)

GGTTTCAGCGTCGATCTC

LPW24485 (copR-IR2)

CATGTCCCATACGTACGA

For mutagenesis of lipA

LPW23981 (lipA-UF)

GCTCTAGAACATGCTCGAACGCTGTG

LPW23982 (lipA-UR)

CAACGACTGCAATCAGCGCGTTCGATGG

LPW23983 (lipA-DF)

CGCGCTGATTGCAGTCGTTGGTCAGTTG

LPW23984 (lipA-DR)

CGAGCTCAGCACCTGCATGAACAC

LPW24340 (lipA-IF)

GGCATACCCGTCTATGTG

LPW24341 (lipA-IR)

GACGATGTTTGCCAACTG

For complementation of ∆copR and ∆lipA

LPW29008 (copR-CF)

GGAATTCCATATGCGGCCATGCGCATCCTGATA

LPW29009 (copR-CR)

TGCTCTAGACGTCATGCGTCGTCCTTCGG

LPW29010 (lipA-CF)

GGGAATTCCATATGCATGAACGTATCGACACGCC

LPW29011 (lipA-CR)

CTAGTCTAGATGTGCGGCTACGCCTGATCG

  1. aRestriction endonuclease sites in the primer sequences appear in bold