Table 1 Genome features of 05HAS, 05ZYH33, 98HAH12 and P1/7
Feature | Genome | |||
|---|---|---|---|---|
05HAS68 | 05ZYH33 | 98HAH12 | P1/7 | |
Length of sequence(bp) | 2,188,363 | 2,096,309 | 2,095,698 | 2,007,491 |
G + C content | 41.18% | 41.11% | 41.11% | 41.30% |
Repeat content length (%) | 9032(0.41%) | 9605(0.46%) | 9357(0.45%) | 0.43% |
Simple repeats length(coverage) | 411(0.02%) | 351(0.02%) | 243(0.01%) | 284(0.01%) |
Low complexity length(coverage) | 1903(0.09%) | 2339(0.11%) | 2330(0.11%) | 1927(0.10%) |
Repeat element length | 659 | 612 | 706 | 323(0.02%) |
Small RNA #(length, coverage) | 30(6, 059, 0.28%) | 30(6, 303, 0.30%) | 30(6, 078, 0.29%) | 28(6053, 0.30%) |
ORF (Length in Genome) | 1,861,062 | 1,766,700 | 1,771,236 | 1,726,753 |
Feature | ||||
ORF # | 1874 | 1824 | 1836 | 1719 |
Genome coverage (%) | 85.04% | 84.28% | 84.52% | 86.02% |
Genome density (genes/Kb) | 0.86 | 0.87 | 0.88 | 0.86 |
Average gene length (bp) | 993 | 969 | 965 | 1005 |
Max gene length (bp) | 7272 | 6822 | 5910 | 6285 |
Function | ||||
ORF with assigned functions | 1741 | 1801 | 1809 | 1594 |
Conserved hypothetical protein | 83 | 16 | 20 | 95 |
ORF without database match | 50 | 7 | 7 | 30 |