Table 2 Distribution of controller protein (HsdC) homologs and their predicted binding sites in Mollicutes. HsdC binding sites are underlined
From: Binding site of restriction-modification system controller protein in Mollicutes
Species | RM-system | Sequence |
|---|---|---|
A. equifetale | Type I | CAATTTAACGATTTGCTACTTTTGAACGATTATTCAACAAATGAACGATTAGGGG |
A. hippikon | Type I | TATTTAACGATTACCATACTTTTTAACGATTTGACAACAATTTAACGATTTGAGA |
A. granularum | Type I | TTTTATTTTGTTAGTCAACTATTTAACGATTACCTTACTTTTTAACGATTTGAGA |
A. modicum | Type I | TTTGAACGTTTAGGGCTAGTTTTGAACGATTACTCAACTTTTGAACGATTTGAGA |
M. arginini | Type I | ATAGCAGAAAGTGCTATAATAGTGTATAATATAATCA |
M. conjunctivae | Type I | CTCAAGTTTTTTGTTATAATTAAACAAGATAAAAAGC |
M. fermentans | Type I | AAAAAATAAAATGTTATAATTTGTTATAAGTTGTTAG |
M. gallinarum | Type I | CGACTAAAAAGTGCTAAAAATGTGATATAATTGTGGC |
M. gallisepticum | Type I | TATCGGCTTTGTGTTAAAATAGTGTTAACGATTTTGA |
M. callifornicum | Type II fusiona | TGTCAAGTAGAGGACATAAAGTCCTTATATCAGCT |
M. hominis | Type II | AATCGACAAAGTGATAGTTTTGTGATATAGTTAAGAT |
M. hyosynoviae | Type II | TATAGAGTAAATGTAATAAAAATGATATAATTTTGTC |
M. mobile | Type II fusiona | TTGTATATTTTAACACACAAATGTTATAATGTAATT |
M. simbae | Type II fusiona | TGTTAATAAGCGGACAAATAGTCCTAAATTAATAA |
U. canigenitalium | Type II fusiona | TAGTTATAATATGTCATATTAGTGTCATATATGAATT |