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Table 3 Frequency (%) of isolates with the designated number of repeats within each locus

From: Evaluation of MLVA for epidemiological typing and outbreak detection of ESBL-producing Escherichia coli in Sweden

No of repeatsa CVN001 CVN002 CVN003 CVN004 CVN007 CVN014 CVN015 CCR001 CVN016 CVN017
1                1      
2    29       13   15     61 100     
3          83 100 2   1   16   1    
4 1         4   5   96 100       
5 40     4       13 59    1      
6 40 100    10       20 41         
7 13     1       5   2     1    
8 5   10         11          
9        1     17          
10        2     6       7    
11        70     5       1    
12    1     2     1          
13        15 9             
14    1     8 91             
19    1                  
0    4               30    
N    54 100 85 100          17   59 100 100 100
  1. aThe outbreak isolates are included, i.e., nine O25b-ST131 isolates (GCEM-10 profile: 6-N-N-14-3-6-4-2-N-N) and three ST1444 isolates (GCEM-10 profile: 7-N-N-11-3-5-4-2-N-N)
  2. Frequency (%) of isolates with the designated number of repeats within each of the loci for MLVA for the typing of 116 ESBL-E. coli isolates. The bolded loci correspond to GECM-3 type MLVA and the seven first loci to that of GECM-7. The bold frequencies represent isolates that belong to the O25b-ST131 lineage (n = 34)
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BMC Microbiology

ISSN: 1471-2180

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