No of repeatsa
|
CVN001
|
CVN002
|
CVN003
|
CVN004
|
CVN007
|
CVN014
|
CVN015
|
CCR001
|
CVN016
|
CVN017
|
---|
1
| | | | | | | | | | | | | | |
1
| | | | | |
2
| | |
29
| | | | | |
13
| |
15
| | | |
61
|
100
| | | | |
3
| | | | | | | | |
83
|
100
|
2
| |
1
| |
16
| |
1
| | | |
4
|
1
| | | | | | | |
4
| |
5
| |
96
|
100
| | | | | | |
5
|
40
| | | |
4
| | | | | |
13
|
59
| | |
1
| | | | | |
6
|
40
|
100
| | |
10
| | | | | |
20
|
41
| | | | | | | | |
7
|
13
| | | |
1
| | | | | |
5
| |
2
| | | |
1
| | | |
8
|
5
| |
10
| | | | | | | |
11
| | | | | | | | | |
9
| | | | | | |
1
| | | |
17
| | | | | | | | | |
10
| | | | | | |
2
| | | |
6
| | | | | |
7
| | | |
11
| | | | | | |
70
| | | |
5
| | | | | |
1
| | | |
12
| | |
1
| | | |
2
| | | |
1
| | | | | | | | | |
13
| | | | | | |
15
|
9
| | | | | | | | | | | | |
14
| | |
1
| | | |
8
|
91
| | | | | | | | | | | | |
19
| | |
1
| | | | | | | | | | | | | | | | | |
0
| | |
4
| | | | | | | | | | | | | |
30
| | | |
N
| | |
54
|
100
|
85
|
100
| | | | | | | | |
17
| |
59
|
100
|
100
|
100
|
-
aThe outbreak isolates are included, i.e., nine O25b-ST131 isolates (GCEM-10 profile: 6-N-N-14-3-6-4-2-N-N) and three ST1444 isolates (GCEM-10 profile: 7-N-N-11-3-5-4-2-N-N)
- Frequency (%) of isolates with the designated number of repeats within each of the loci for MLVA for the typing of 116 ESBL-E. coli isolates. The bolded loci correspond to GECM-3 type MLVA and the seven first loci to that of GECM-7. The bold frequencies represent isolates that belong to the O25b-ST131 lineage (n = 34)