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Table 3 Frequency (%) of isolates with the designated number of repeats within each locus

From: Evaluation of MLVA for epidemiological typing and outbreak detection of ESBL-producing Escherichia coli in Sweden

No of repeatsa

CVN001

CVN002

CVN003

CVN004

CVN007

CVN014

CVN015

CCR001

CVN016

CVN017

1

              

1

     

2

  

29

     

13

 

15

   

61

100

    

3

        

83

100

2

 

1

 

16

 

1

   

4

1

       

4

 

5

 

96

100

      

5

40

   

4

     

13

59

  

1

     

6

40

100

  

10

     

20

41

        

7

13

   

1

     

5

 

2

   

1

   

8

5

 

10

       

11

         

9

      

1

   

17

         

10

      

2

   

6

     

7

   

11

      

70

   

5

     

1

   

12

  

1

   

2

   

1

         

13

      

15

9

            

14

  

1

   

8

91

            

19

  

1

                 

0

  

4

             

30

   

N

  

54

100

85

100

        

17

 

59

100

100

100

  1. aThe outbreak isolates are included, i.e., nine O25b-ST131 isolates (GCEM-10 profile: 6-N-N-14-3-6-4-2-N-N) and three ST1444 isolates (GCEM-10 profile: 7-N-N-11-3-5-4-2-N-N)
  2. Frequency (%) of isolates with the designated number of repeats within each of the loci for MLVA for the typing of 116 ESBL-E. coli isolates. The bolded loci correspond to GECM-3 type MLVA and the seven first loci to that of GECM-7. The bold frequencies represent isolates that belong to the O25b-ST131 lineage (n = 34)
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BMC Microbiology

ISSN: 1471-2180

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