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Table 2 Results of 454 pyrosequencing from each Red Snapper individual and sample type

From: Microbiota of wild-caught Red Snapper Lutjanus campechanus

Fish ID Sample type Original # sequences Original # OTUs Final # sequences Final # OTUs Expected # OTUs Good's coverage Shannon evennness index
01B Blood 2263 48 950 43 56 0.991 0.724
04B Blood 3019 83 950 64 103 0.98 0.735
08B Blood 950 49 950 49 99 0.991 0.712
10B Blood 2495 52 950 46 62 0.988 0.665
01G Gill 3055 74 950 59 103 0.984 0.599
02G Gill 2581 80 950 68 104 0.981 0.602
03G Gill 9276 91 950 51 102 0.984 0.533
04G Gill 3045 81 950 61 101 0.982 0.455
05G Gill 11888 153 950 90 245 0.963 0.689
06G Gill 4000 134 950 90 170 0.973 0.762
07G Gill 4170 109 950 75 247 0.983 0.816
08G Gill 3140 77 950 64 107 0.986 0.706
09G Gill 4355 76 950 54 121 0.986 0.649
05 F Feces 3859 109 950 74 147 0.973 0.545
06 F Feces 3669 141 950 99 195 0.967 0.704
07 F Feces 4156 92 950 66 141 0.987 0.8
08 F Feces 4626 116 950 72 354 0.966 0.512
09 F Feces 2595 66 950 53 126 0.986 0.727
10 F Feces 3154 107 950 80 251 0.968 0.591
Average Blood 2182 58 950 51 80 0.988 0.709
  Gill 5057 97 950 68 144 0.98 0.646
  Feces 3677 105 950 74 202 0.975 0.647
  1. Averages for each sample type are included. Original sequences and # OTUs are from non-standardized data whereas final sequences and # OTUs are after standardizing to 950 sequences per sample (sample 08B)