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Table 4 Differential gene expression in lipid accumulation related pathways

From: De novo transcriptomic analysis of Chlorella sorokiniana reveals differential genes expression in photosynthetic carbon fixation and lipid production

Product

Gene name

EC number

Trinity ID

Log2FCa (48 h)

Log2FC (84 h)

Fatty acid biosynthyesis pathway

acetyl-CoA carboxylase

ACC

EC:6.4.1.2

comp6756_c0_seq1

−1.71

−0.63

biotin carboxylase

BC

EC:6.3.4.14

comp12323_c26_seq1

0.82

2.55

malonyl-CoA ACP transacylase

MAT

EC:2.3.1.39

comp11367_c0_seq2

−1.27

−0.74

KAS Beta-ketoacyl-ACP synthase

KASII

EC:2.3.1.179

comp11672_c1_seq3

0.48

0.72

KAS Beta-ketoacyl-ACP synthase

KASIII

EC:2.3.1.180

comp10141_c0_seq2

0.27

0.35

Beta-ketoacyl-ACP reductase

KAR

EC:1.1.1.100

comp10720_c0_seq1

1.23

0.74

beta-hydroxyacyl-ACP dehydrase

HAD

EC:4.2.1.59

comp12130_c0_seq1

0.31

1.43

Enoyl-ACP reductase

EAR

EC:1.3.1.10

comp5575_c1_seq1

−2.23

0.10

acyl-ACP desaturase

AAD

EC:1.14.19.2

comp12618_c0_seq1

0.27

0.45

Oleoyl-ACP thioesterase

OAT

EC:3.1.2.14

comp10287_c1_seq1

0.54

0.53

Triacylglycerol biosynthesis pathway

glycerol kinase

GK

EC:2.7.1.30

comp17390_c0_seq1

1.21

1.12

glycerol-3-phosphate O-acyltransferase

GPAT

EC:2.3.1.15

comp8649_c0_seq4

0.14

2.41

1-acyl-sn-glycerol-3-phosphate acyltransferase

AGPAT

EC:2.3.1.51

comp8576_c1_seq1

1.05

0.99

phosphatidate phosphatase

PP

EC:3.1.3.4

comp10073_c0_seq1

−0.75

−3.36

diacylglycerol O-acyltransferase

DGAT

EC:2.3.1.20

comp8627_c0_seq2

0.08

0.15

Fatty acid catabolism pathway

acyl-CoA synthetase

ACSL

EC:6.2.1.3

comp11861_c1_seq8

−0.57

−0.29

acyl-CoA oxidase

AOx

EC:1.3.3.6

comp8247_c0_seq2

2.17

1.24

acyl-CoA dehydrogenase

ACDH

EC:1.3.8.7

comp12261_c15_seq6

0.62

1.22

enoyl-CoA hydratase

ECH

EC:4.2.1.17

comp8664_c0_seq1

0.46

0.27

3-hydroxyacyl-CoA dehydrogenase

HADH

EC:1.1.1.35, 1.1.1.211

comp13763_c0_seq1

1.64

1.97

acetyl-CoA C-acyltransferase

ACAT

EC:2.3.1.16, 2.3.1.9

comp12241_c5_seq15

0.89

0.02

Starch biosynthesis and catabolism, and ethanol fermentation pathway

phosphoglucomutase

PGM

EC:5.4.2.2

comp10999_c2_seq3

−1.11

−0.12

ADP-glucose pyrophosphorylase

AGPase

EC:2.7.7.27

comp11635_c1_seq2

0.30

1.67

starch synthase

SS

EC:2.4.1.21

comp13246_c0_seq1

0.04

0.30

1,4-α-glucan branching enzyme

BE

EC:2.4.1.18

comp7752_c1_seq1

−1.47

−1.66

hexokinase

HXK

EC:2.7.1.1

comp5345_c0_seq1

−0.20

1.49

β-amylase

β-AMY

EC:3.2.1.2

comp13107_c0_seq1

1.49

1.36

α-amylase

α-AMY

EC:3.2.1.1

comp11995_c1_seq7

2.22

1.10

oligo-1,6-glucosidase

O1,6G

EC:3.2.1.10

comp11995_c1_seq11

2.20

1.49

starch phosphorylase

Spase

EC:2.4.1.1

comp12085_c7_seq13

0.79

1.47

pyruvate decarboxylase

PDC

EC:4.1.1.1

comp6820_c0_seq2

−0.30

0.93

alcohol dehydrogenase

ADH

EC:1.1.1.1

comp11611_c1_seq3

0.71

1.13

Pyruvate dehydrogenase complex

PDHC

EC:1.2.4.1, 2.3.1.12, 1.8.1.4

comp12893_c0_seq1

1.48

1.90

  1. a \( \mathrm{Log}2\mathrm{F}\mathrm{C}= Log2\left(\frac{FPKMnitrogen- limited}{FPKMnitrogen- replete}\right) \)