| SBSEC (n = 74)2 | Sii (n = 39) | S. lutetiensis (n = 8) | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Index of association1 | IA | 3.132 | 2.079 | 2.422 | ||||||||||
IA S | 0.349 | 0.231 | 0.269 | |||||||||||
Gene | Gene product | A3 [bp] | A3 [no] | dN/dS | pms4 [No (%)] | SID (95Â % CI)5 | A [no] | dN/dS | pms [No (%)] | SID | A [no] | dN/dS | pms [No (%)] | SID |
ddlA | D-alanine-D-alanine ligase | 489 | 28 | 0.079 | 143 (29.2) | 0.905 (0.867–0.943) | 5 | 0.171 | 5 (1) | 0.704 (0.648–0.761) | 6 | 0.123 | 18 (3.7) | 0.929 (0.840–1.017) |
gki | glucokinase | 438 | 27 | 0.059 | 119 (27.2) | 0.901 (0.858–0.944) | 5 | 0.144 | 5 (1.1) | 0.668 (0.584–0.752) | 5 | 0.072 | 21 (4.8) | 0.893 (0.722–1.064) |
glnA | glutamine synthetase | 396 | 21 | 0.039 | 59 (14.9) | 0.906 (0.878–0.934) | 7 | 0.163 | 8 (2) | 0.745 (0.688–0.802) | 6 | 0.064 | 10 (2.5) | 0.929 (0.806–1.052) |
mutS | DNA mismatch repair ATPase | 552 | 30 | 0.028 | 172 (31.2) | 0.926 (0.894–0.959) | 5 | 0.066 | 4 (0.7) | 0.752 (0.688–0.815) | 5 | 0.055 | 39 (7.1) | 0.857 (0.704–1.010) |
mutS2 | mismatch repair ATPase | 495 | 36 | 0.030 | 159 (32.1) | 0.93 (0.890–0.969) | 10 | 0.263 | 10 (2) | 0.762 (0.656–0.869) | 5 | 0.022 | 44 (8.9) | 0.857 (0.704–1.010) |
pheS | phenylalanyl tRNA synthetase | 480 | 28 | 0.026 | 110 (22.9) | 0.923 (0.889–0.957) | 10 | 0.009 | 51 (10.6) | 0.776 (0.680–0.872) | 4 | 0.015 | 18 (3.8) | 0.643 (0.301–0.985) |
proS | prolyl tRNA synthetase | 417 | 28 | 0.059 | 128 (30.7) | 0.92 (0.887–0.953) | 7 | 0.353 | 7 (1.7) | 0.756 (0.678–0.833) | 5 | 0.106 | 18 (4.3) | 0.786 (0.521–1.051) |
pyrE | orotate phosphoribosyl transferase | 393 | 36 | 0.022 | 97 (24.7) | 0.972 (0.961–0.983) | 16 | 0.061 | 22 (5.6) | 0.927 (0.894–0.960) | 5 | 0.013 | 22 (5.6) | 0.857 (0.704–1.010) |
thrS | threonyl tRNA synthetase | 573 | 31 | 0.074 | 168 (29.3) | 0.957 (0.941–0.974) | 11 | 0.105 | 99 (17.3) | 0.883 (0.842–0.924) | 5 | 0.061 | 27 (4.7) | 0.857 (0.704–1.010) |
tpiA | triosephosphate isomerase | 408 | 17 | 0.119 | 36 (8.8) | 0.894 (0.862–0.927) | 4 | 0.152 | 3 (0.7) | 0.687 (0.637–0.737) | 5 | 0.056 | 12 (2.9) | 0.893 (0.816–0.969) |
Mean (95 % CI) |  |  |  |  | 0.924 (0.874–0.973) |  |  |  | 0.766 (0.602–0.93) |  |  |  | 0.85 (0.682–1.018) |