Table 2 Assemblages and sub-assemblages of G. duodenalis determined by the three genes
Study site | Isolate code | Children | Assemblages and sub-assemblages | |||
|---|---|---|---|---|---|---|
Sex | Age | tpi | bg | gdh | ||
Holetta | HH-02 | F | 5-14 years | B (B2) | B | B* |
HH-06 | F | 5-14 years | AII | AII | AII | |
HH-13 | M | <5 years | B* | B | – | |
HH-25 | M | 5–14 years | AII | AII | – | |
HH-34 | M | 5–14 years | B (B2) | B | – | |
HH-49 | M | 5–14 years | B | B* | B* | |
HH-55 | M | 5–14 years | – | A (A3) | – | |
HH-57 | M | <5 years | – | A (A3) | – | |
HH-70 | F | 5–14 years | B (B2) | B (B3) | B* | |
HH-71 | M | <5Â years | B* | B | B* | |
HH-72 | M | <5Â years | B* | B (B3) | B* | |
HH-78 | M | 5–14 years | B* | – | – | |
HH-80 | M | 5–14 years | AII | – | – | |
HH-84 | F | <5Â years | B (WB9) | B | B* | |
HH-93 | M | 5–14 years | AII | AII | AII | |
Sendafa | SH-03 | F | 5–14 years | B (B2) | - | BIV |
SH-12 | M | 5–14 years | B (B2) | B* | B* | |
SH-14 | M | 5–14 years | B | B* | B* | |
SH-18 | M | 5–14 years | B | B (B3) | B* | |
SH-20 | M | <5Â years | AII | AII | AII | |
SH-33 | F | 5–14 years | AII | AII | AII | |
SH-35 | F | 5–14 years | B (B2) | B (B3) | B* | |
SH-38 | M | 5–14 years | AII | AII | – | |
SH-43 | F | <5Â years | B (WB8) | B (B3) | B* | |
SH-48 | F | 5–14 years | B | – | – | |
SH-49 | M | 5–14 years | B (B2) | B* | B* | |
SH-51 | F | <5 years | B | – | – | |
SH-54 | M | 5–14 years | B (B2) | B | B* | |
SH-69 | M | 5–14 years | AII | AII | AII | |
SH-74 | M | 5–14 years | B (B2) | – | – | |
SH-75 | F | 5–14 years | B | B | B* | |
SH-82 | M | 5–14 years | AII | AII | AII | |
SH-83 | F | 5–14 years | B* | B | B* | |
SH-92 | M | 5–14 years | B (WB9) | B | B* | |
SH-93 | F | 5–14 years | B (B2) | B | B* | |
Chancho | CH-20 | F | 5–14 years | B (B2) | – | – |
CH-26 | F | 5–14 years | B (WB9) | B (B3) | B* | |
CH-36 | F | 5–14 years | B* | B (B3) | – | |
CH-37 | F | 5–14 years | B* | B | – | |
CH–40 | M | 5–14 years | B* | B (B3) | – | |
CH-44 | M | 5–14 years | B (B2) | B | B* | |
CH-49 | F | 5–14 years | B* | – | – | |
CH-55 | M | <5Â years | B (B2) | B | B* | |
DH-07 | F | 5–14 years | – | B | B* | |
DH-08 | F | 5–14 years | B (B2) | B | – | |
DH-11 | M | 5–14 years | B (B2) | – | – | |
DH-17 | M | 5–14 years | B | B | – | |
DH-21 | M | 5–14 years | B (B2) | B (B3) | – | |