Table 1 Summary of RNA-seq mapping statistics (numbers of reads are in millions)
Sample | No of sequences | No of aligned reads (% of total sequence) | No of rRNA reads (% of aligned reads) | No of aligned mRNA reads (% of aligned reads) | R-value (biological replicates) |
|---|---|---|---|---|---|
Joint fluid | 348.4 | 4.1 (1.2) | 3.8 (92.7) | 0.3 (7.3) | - |
LB culture | |||||
1 | 26.7 | 18.1 (67.8) | 8 (44.2) | 10.1 (55.8) | >0.95 |
2 | 26.5 | 17.7 (66.8) | 10.1 (57.1) | 7.1 (40.1) | |
3 | 23.1 | 15.7 (68.0) | 7.8 (49.7) | 7.5 (47.8) | |