Table 1 Relative abundance of the top five predominant classes and genera during each period of development
From: Longitudinal study of the early-life fecal and nasal microbiotas of the domestic pig
Age Range (days) | Dominant classes (Mean relative abundance, %) | Dominant genera (Mean relative abundance, %) | ||
|---|---|---|---|---|
Fecal | Nasal | Fecal | Nasal | |
1–3 | Clostridia (44.5) | Gammaproteobacteria (37.7) | Clostridium (17.9) | Moraxella (24.2) |
Gammaproteobacteria (27.1) | Bacilli (27.5) | Escherichia (15.0) | Rothia (14.9) | |
Fusobacteria (14.0) | Actinobacteria (17.6) | Fusobacterium (10.5) | Clostridium (10.4) | |
Bacilli (6.0) | Clostridia (13.7) | Clostridium XIVa (4.3) | Globicatella (9.9) | |
Bacteroidia (2.8) | Betaproteobacteria (1.5) | Lactobacillus (4.2) | Actinobacillus (5.3) | |
7–21 | Clostridia (44.5) | Gammaproteobacteria (49.3) | Clostridium (8.8) | Moraxella (46.7) |
Gammaproteobacteria (10.8) | Clostridia (27.9) | Escherichia (8.6) | Clostridium (16.5) | |
Bacilli (10.4) | Bacilli (11.1) | Lactobacillus (8.2) | Lactobacillus (3.9) | |
Bacteroidia (5.9) | Betaproteobacteria (3.2) | Clostridium XIVa (7.4) | unclassified Firmicutes (3.4) | |
Erysipelotrichia (4.1) | Actinobacteria (2.8) | unclassified Firmicutes (5.2) | Kingella (2.8) | |
28–35 | Clostridia (29.1) | Gammaproteobacteria (47.5) | Megasphaera (14.0) | Moraxella (40.0) |
Negativicutes (26.5) | Bacilli (27.9) | Lactobacillus (12.3) | Lactobacillus (21.2) | |
Bacilli (15.6) | Clostridia (17.1) | Clostridium (4.6) | Blautia (3.0) | |
Gammaproteobacteria (6.7) | Erysipelotrichia (2.9) | unclassified Firmicutes (4.2) | Erysipelotrichaceae incertae sedis (2.9) | |
Erysipelotrichia (4.2) | Betaproteobacteria (1.0) | Succinivibrio (4.1) | Staphylococcus (2.4) | |
42–49 | Negativicutes (32.4) | Gammaproteobacteria (59.5) | Megasphaera (21.2) | Moraxella (56.5) |
Clostridia (31.7) | Bacilli (15.7) | Lactobacillus (12.3) | Lactobacillus (11.1) | |
Bacilli (17.4) | Clostridia (15.1) | Roseburia (4.2) | Kingella (3.2) | |
Erysipelotrichia (5.4) | Betaproteobacteria (3.4) | unclassified Firmicutes (3.9) | unclassified Firmicutes (2.9) | |
Bacteroidia (3.7) | Erysipelotrichia (2.2) | Erysipelotrichaceae incertae sedis (3.9) | Blautia (2.3) | |