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Table 3 Alleles of tcdA, corresponding probes, GenBank entries and typing data

From: DNA-Microarray-based Genotyping of Clostridium difficile

tcdA allele Reference sequence Other GenBank entries Hybridization pattern Associated slpA alleles Associated ribotypes Associated clades Associated sequence types Associated hybridization profiles
tcdA R20291 FN545816.1 AAML04000007.1, ABFD02000006.1, ABHD02000008.1, ABHE02000016.1, ABHF02000018.1, ABHG02000011.1, ABKJ02000013.1, ABKK02000013.1, ABKL02000008.1, ADDE01000337.1, ADNX01000011.1, ADVM01000023.1, AGAC01000012.1, AM180355.1, AY238985.1, FN538970.1, FN665653.1, FN665654.1, FN668941.1, FN668944.1, M30307.1, X51797.1, X92982.1 probe-1132+ probe-1134+ probe-1135+ probe-1247 slpA 23m63, slpA 79685, slpA DJNS0578, slpA JND08037, slpA JND08162, slpA JND09041, slpA MRY060211, slpA R12885, slpA R13540, slpA R13711, slpA 630, s lpA 6407, slpA 6503 trunc., slpA BI9, slpA J9952 trunc., slpA Kohn, slpA R12884 trunc., slpA R12884, slpA R13541, slpA R20291, slpA-negatives RT-001, RT-002, RT-005, RT-009, RT-011, RT-012, RT-013, RT-014, RT-015, RT-023, RT-027, RT-029, RT-031, RT-045, RT-046, RT-049, RT-054, RT-056, RT-057, RT-064, RT-070, RT-071, RT-072, RT-078, RT-081, RT-087, RT-094, RT-103, RT-137, RT-150, RT-159, RT-163 I, II, III, V ST-01, ST-03, ST-04, ST-08, ST-09, ST-11, ST-17, ST-35, ST-42, ST-45, ST-46, ST-54, ST-55, ST-58 HP-01, HP-02, HP-03, HP-04, HP-05, HP-06, HP-07, HP-08, HP-09, HP-10, HP-12, HP-13, HP-14, HP-16, HP-17, HP-18, HP-19, HP-20, HP-22, HP-23, HP-24, HP-25, HP-30, HP-31, HP-32, HP-33, HP-34, HP-37, HP-38, HP-39
tcdA CF5 FN665652.1 AB012304.1, AF217291.1, AGAA01000013.1, AGAB01000024.1, FN668375.1, Y12616.1 probe-1132+ probe-1135+ probe-1247 slpA 6407, slpA CF5, slpA 79685 RT-17 I, IV ST-37, ST-86 HP-28, HP-35, HP-36
tcdA negative - - none slpA 1446, slpA 23m63, slpA R13711, slpA 6407, s lpA 6503, slpA Kohn, slpA R13700 RT-009, RT-010, RT-011, RT-012, RT-015, RT-031, RT-039, RT-049, RT-056, RT-057, RT-070, RT-071, RT-094 I, ”VI” ST-03, ST-54, ST-55, ST-58, ST-127dlv HP-11, HP-15, HP-21, HP-26, HP-27, HP-29, HP-40