Table 3 Alleles of tcdA, corresponding probes, GenBank entries and typing data

tcdA _R20291

FN545816.1

AAML04000007.1, ABFD02000006.1, ABHD02000008.1, ABHE02000016.1, ABHF02000018.1, ABHG02000011.1, ABKJ02000013.1, ABKK02000013.1, ABKL02000008.1, ADDE01000337.1, ADNX01000011.1, ADVM01000023.1, AGAC01000012.1, AM180355.1, AY238985.1, FN538970.1, FN665653.1, FN665654.1, FN668941.1, FN668944.1, M30307.1, X51797.1, X92982.1

probe-1132+ probe-1134+ probe-1135+ probe-1247

slpA _23m63, slpA ₇₉₆₈₅, slpA _DJNS0578, slpA _JND08037, slpA _JND08162, slpA _JND09041, slpA _MRY060211, slpA _R12885, slpA _R13540, slpA _R13711, slpA ₆₃₀, s lpA ₆₄₀₇, slpA ₆₅₀₃ trunc., slpA _BI9, slpA _J9952 trunc., slpA _Kohn, slpA _R12884 trunc., slpA _R12884, slpA _R13541, slpA _R20291, slpA-negatives

RT-001, RT-002, RT-005, RT-009, RT-011, RT-012, RT-013, RT-014, RT-015, RT-023, RT-027, RT-029, RT-031, RT-045, RT-046, RT-049, RT-054, RT-056, RT-057, RT-064, RT-070, RT-071, RT-072, RT-078, RT-081, RT-087, RT-094, RT-103, RT-137, RT-150, RT-159, RT-163

I, II, III, V

ST-01, ST-03, ST-04, ST-08, ST-09, ST-11, ST-17, ST-35, ST-42, ST-45, ST-46, ST-54, ST-55, ST-58

HP-01, HP-02, HP-03, HP-04, HP-05, HP-06, HP-07, HP-08, HP-09, HP-10, HP-12, HP-13, HP-14, HP-16, HP-17, HP-18, HP-19, HP-20, HP-22, HP-23, HP-24, HP-25, HP-30, HP-31, HP-32, HP-33, HP-34, HP-37, HP-38, HP-39

tcdA _CF5

FN665652.1

AB012304.1, AF217291.1, AGAA01000013.1, AGAB01000024.1, FN668375.1, Y12616.1

probe-1132+ probe-1135+ probe-1247

slpA _6407, slpA _CF5, slpA ₇₉₆₈₅

RT-17

I, IV

ST-37, ST-86

HP-28, HP-35, HP-36

tcdA negative

-

-

none

slpA ₁₄₄₆, slpA _23m63, slpA _R13711, slpA ₆₄₀₇, s lpA ₆₅₀₃, slpA _Kohn, slpA _R13700

RT-009, RT-010, RT-011, RT-012, RT-015, RT-031, RT-039, RT-049, RT-056, RT-057, RT-070, RT-071, RT-094

I, ”VI”

ST-03, ST-54, ST-55, ST-58, ST-127dlv

HP-11, HP-15, HP-21, HP-26, HP-27, HP-29, HP-40