Table 1 The 20 most abundant OTUs in chicken cecum
Closest culturable isolate | Isolate accession number | % similarity | % in cecal | % in fecal | OTU ID |
|---|---|---|---|---|---|
Bacteroides fragilis | CR626927 | 99.62 | 14.1 | 1.2 | 4 |
Lactobacillus crispatus | Y17362 | 99.81 | 11.3 | 15.4 | 1 |
Lactobacillus johnsonii | ACGR01000047 | 99.61 | 9.6 | 12.2 | 2 |
Lactobacillus salivarius | AF089108 | 99.43 | 5.4 | 12.7 | 3 |
Lactobacillus reuteri | AP007281 | 99.40 | 4.3 | 5.6 | 5 |
Acholeplasma palmae | L33734 | 79.53 | 3.9 | 0.5 | 8 |
Lactobacillus helveticus | ACLM01000202 | 97.62 | 3.5 | 8.6 | 133 |
Butyricicoccus pullicaecorum | EU410376 | 82.18 | 3.4 | 0.2 | 9 |
Faecalibacterium prausnitzii | AJ413954 | 94.71 | 2.3 | 0.3 | 12 |
Lactobacillus vaginalis | AF243177 | 99.60 | 1.3 | 0.8 | 10 |
Lactobacillus helveticus | ACLM01000202 | 96.67 | 1.2 | 2.7 | 874 |
Pontibacillus litoralis | EU583724 | 78.46 | 0.9 | 0.2 | 13 |
Exiguobacterium acetylicum | X70313 | 78.33 | 0.9 | 0.1 | 14 |
Ruminococcus albus | L76598 | 82.62 | 0.9 | 0.1 | 21 |
Ruminococcus albus | L76598 | 89.88 | 0.8 | 0.1 | 16 |
Parabacteroides distasonis | CP000140 | 97.31 | 0.8 | 0.0 | 18 |
Ruminococcus flavefaciens | X83430 | 86.85 | 0.8 | 0.1 | 15 |
Clostridium cellobioparum | X71856 | 83.27 | 0.7 | 0.1 | 17 |
Clostridium termitidis | FR733680 | 80.37 | 0.7 | 0.1 | 23 |
Clostridium symbiosum | M59112 | 91.97 | 0.7 | 0.1 | 25 |