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Table 3 Primer sequences

From: A naturally occurring nucleotide polymorphism in the orf2/folc promoter is associated with Streptococcus suis virulence

Primer name

Sequence 5’-3’

Target

comE1

cgagctc ggaagaattggttattgcgcgtg

orf2[10] forward - Sac I

comE2

cgggatcc cgggggatgacctgttgcttg

orf2[10] reverse Bam HI

comE3

tcccccggg ggagtcgtgtgtattcgacagcgg

P-orf2-folC[10] reverse Sma I

comE4

tcccccggg ggacaagcaacaggtcatcccc

folC[10] forward Sma I

comE6

cgggatcc cggttgaatgcccggcaagcc

folC[10] reverse - Bam HI

IL-1--fw

ggccgccaagatataactga

Porcine interleukin 1-

IL-1--rev

ggacctctgggtatggctttc

Porcine interleukin 1-

IL-6-fw

gacaaagccaccacccctaa

Porcine interleukin 6

IL-6-rev

ctcgttctgtgactgcagcttatc

Porcine interleukin 6

IL-8-fw

ttcgatgccagtgcataaata

Porcine interleukin 8

IL-8-rev

ctgtacaaccttctgcaccca

Porcine interleukin 8

IL-10-fw

gagaaactagggagcccctttg

Porcine interleukin 10

IL-10-rev

tggccacagctttcaagaatg

Porcine interleukin 10

IL-12-fw

ggagtataagaagtacagagtgg

Porcine interleukin 12-p40

IL-12-rev

gatgtccctgatgaagaagc

Porcine interleukin 12-p40

TNF-α-fw

cgcccacgttgtagccaatgt

Porcine TNF-α

TNF-α-rev

cagatagtcgggcaggttgatctc

Porcine TNF-α

IFN-γ-fw

caaagccatcagtgaactcatca

Porcine interferon-γ

IFN-γ-rev

tctctggccttggaacatagtct

Porcine interferon-γ

Orf2-fw

ctacggctggttcttctatcgaa

S. suis orf2

Orf2-rev

gcaatcggtgtcatgataaagg

S. suis orf2

folC-fw

gtttgtccgtccatcggttt

S. suis polyfolylpolyglutamate synthase

Folc-rev

ctggtcggtcgcatagatga

S. suis polyfolylpolyglutamate synthase

RecA-fw

ggtttgcaggctcgtatgatg

S. suis recombinase A

RecA-rev

accaaacatgacaccgacttttt

S. suis recombinase A

t488a

gaaaggtatagtttttagcaagtgga caaaatatatagtgtgtgatacaat

Promoter orf2

t488a_antisense

attgtatcacacactatatattttgt ccacttgctaaaaactatacctttc

Promoter orf2

  1. Bold characters in primers for com indicated the recognition site for restriction enzymes that was added to the primers.