Table 1 HetR ChIP-seq peak regions a
From: Deep sequencing of HetR-bound DNA reveals novel HetR targets in Anabaenasp. strain PCC7120
Chromosomal coordinates | Length base pairs | Gene to left | Fold change expression in ΔhetR6 h | Gene to right | Fold change expression in ΔhetR6 h | HetR binding site |
|---|---|---|---|---|---|---|
0136127..0136558 | 431 | all0131 | Low coverage | alr0132 | -1.1 | Yes |
0613436..0613919 | 483 | patA (all0521) | -8.0 | alr0522d | -5.6 | Yes |
1729122..1729569 | 447 | all1467 | 1.4 | alr1468 | Low coverage | Yes |
1732738..1733693 | 955 | asr1469c | 1.7 | alr1470 | -3.1 | Yes |
1734763..1735224 | 461 | all1471 | -2.3 | all1472c | -1.6 | Yes |
1788499..1788932 | 433 | alr1527 | -5.8 | alr1528d | NAb | Yes |
2427714..2428147 | 433 | all2027 | 3.8 | asl2028 | -1.5 | Yes |
2691579..2692024 | 445 | all2239 | -4.0 | alr2240 | -7.1 | Yes |
2820376..2822006 | 678 | alr2338c | -4.4 | hetR (alr2339) | -131 | Yes |
3431297..3432038 | 741 | hetC (alr2817)c | NA | hetP (alr2818) | -4.4 | Yes |
3627499..3627977 | 478 | alr2986c | -3.0 | alr2987d | NA | Yes |
3695599..3696450 | 851 | asr3053c | 2.1 | all3054d | NA | Yes |
3821175..3821606 | 431 | alr3156c | NA | aphA (alr3157) | -7.7 | Yes |
4383426..4383866 | 440 | avaIR (all3631)d | -1.3 | avaIM (all3632)c | -1.9 | Yes |
4539927..4540364 | 437 | alr3757c | NA | alr3758 | 11 / 0 | Yes |
4740704..4741151 | 447 | alr3926c | NA | all3927c | -2.9 | Yes |
5064797..5065242 | 445 | asr4228c | NA | alr4229 | -7.5 | Yes |
5303024..5303480 | 456 | all4424 | 5.2 | all4425c | 1.7 | Yes |
5309952..5310383 | 431 | all4430 | 4.9 | all4431c | 10.3 | Yes |
5355615..5356047 | 432 | alr4469c | -1.3 | asr4470 | -10.8 | Yes |
0374646..0375090 | 444 | all0326 | Low coverage | all0327c | NA | No |
2274728..2275590 | 862 | alr1903c | -4.9 | cyaB2 (all1904)c | NA | No |
2693489..2693944 | 455 | alr2241c | NA | alr2242 | -13.4 | No |
2706756..2707187 | 431 | gvpA (asl2254) | -6.3 | asr2255 | Low coverage | No |
4857231..4857672 | 441 | alr4031c | NA | alr4032 | Low coverage | No |
6129044..6129475 | 431 | all5131 | -4.2 | all5132c | -2.5 | No |