Skip to main content

Table 2 Up-regulated genes. Functional classes of genes shown are ordered by the S score of the most highly regulated examples in the class with S score ≥ 5.

From: Induction of a chemoattractant transcriptional response by a Campylobacter jejuniboiled cell extract in colonocytes

Function Symbol Name S Score
Chemokine CCL20 Chemokine (C-C Motif) Ligand 20 13.542
  CXCL3 Chemokine (C-X-C Motif) Ligand 3 11.866
  CXCL2 Chemokine (C-X-C Motif) Ligand 2 11.742
  IL8 Interleukin 8 11.393
  CXCL1 Chemokine (C-X-C Motif) Ligand 1 11.096
  CXCL6 Chemokine (C-X-C Motif) Ligand 6 10.79
  CCL2 Chemokine (C-C Motif) Ligand 2 5.294
TNF/NFkB superfamily TNFAIP3 Tumor Necrosis Factor, Alpha-Induced Protein 3 11.678
  IKBA Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 10.956
  TNIP1 TNFAIP3 Interacting Protein 1 9.344
  TNFAIP2 Tumor Necrosis Factor, Alpha-Induced Protein 2 8.293
  OPTN Optineurin 6.487
  IL32 Interleukin 32 6.12
  NFKB1 Nuclear Factor Kappa B (P105) 5.355
Apoptosis/Cell death UBD Ubiquitin D 11.647
  BIRC3 Baculoviral IAP Repeat-Containing 3 11.063
  CFLAR CASP8 And FADD-Like Apoptosis Regulator 6.224
  SGK Serum/Glucocorticoid Regulated Kinase 5.705
  ISG20 Interferon Stimulated Exonuclease Gene 20 kda 5.575
Extracellular Matrix MMP7 Matrix Metallopeptidase 7 (Matrilysin, Uterine) 9.812
  SDC4 Syndecan 4 (Amphiglycan, Ryudocan) 8.923
  LAMA3 Laminin, Alpha 3 5.824
  LAMC2 Laminin, Gamma 2 5.32
Folate receptor FOLR1 Folate Receptor 1 (Adult) 8.963
Redox state SOD2 Superoxide Dismutase 2, Mitochondrial 8.879
  TXNRD1 Thioredoxin Reductase 1 6.378
Cell adhesion ICAM1 Intercellular Adhesion Molecule 1 8.879
  FNDC3B Fibronectin Type III Domain Containing 3B 5.851
Cytokines/Receptors IFNGR1 Interferon Gamma Receptor 1 8.403
  CSF2 Colony Stimulating Factor 2 5.101
  PLAT Plasminogen Activator, Tissue 7.464
  SERPINB2 Serpin Peptidase Inhibitor 2 6.319
Energy metabolism ATP1B1 Atpase, Na+/K+ Transporting, Beta 1 Peptide 7.184
Nuclear transcription CEBPD CCAAT/Enhancer Binding Protein Delta 6.708
  RARRES1 Retinoic Acid Receptor Responder 6.179
Antibacterial LCN2 Lipocalin 2 6.6
  PI3 Peptidase Inhibitor 3 (Elafin) 5.057
Cell signalling CDC42 Cell Division Cycle 42 7.28
  DUSP5 Dual Specificity Phosphatase 5 6.541
  SGPL1 Sphingosine-1-Phosphate Lyase 1 6.242
Cytoskeleton/cytokinesis TPM1 Tropomyosin 1 5.689
  PDLIM5 PDZ And LIM Domain 5 5.169
Transcription, protein synthesis and export SF3B1 Splicing Factor 3b, Subunit 1, 5.146
  UGCG UDP-Glucose Ceramide Glucosyltransferase 5.388
Cell cycle PLK2 Polo-Like Kinase 2 5.55
Structural SYNGR3 Synaptogyrin 3 5.133
Antigen presentation TAP1 Transporter 1, ATP-Binding Cassette 5.207