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Table 1 Fungal taxa identified on root tip samples from spruce and beech by sequencing of the ITS clone libraries of the pooled ECM tips and morphotyping/ITS sequencing of the individual ECM root tips.

From: Development and validation of an oligonucleotide microarray to characterise ectomycorrhizal fungal communities

  Pooled ECM tips ITS cloning/ITS sequencing Individual ECM tips Morphotyping/ITS sequencing
Species name Acc. n° Identities (%) (Unite/NCBI) Acc. n° Identities (%) (Unite/NCBI)
ECM from Picea abies:     
Thelephora terrestris EU427330.1 360/363 (100) UDB000971 142/151 (94)
Cenococcum geophilum UDB002297 375/379 (98) UDB002297 211/216 (97)
Clavulina cristata UDB001121 375/375 (100) UDB 001121 281/289 (97)
Atheliaceae (Piloderma) sp AY097053.1 343/362 (94) EU597016.1 612/624 (98)
Cortinarius sp 1 AJ889974.1 361/367 (98) UDB002224 232/242 (95)
Xerocomus pruinatus UDB000018 348/351 (99) UDB 000016 692/696 (99)
Tomentelopsis submollis AM086447.1 319/324 (98) morphotyping only
Inocybe sp AY751555.1 249/266 (93) morphotyping only
Xerocomus badius UDB000080 375/379 (98) UDB000080 400/417 (95)
Tylospora asterophora UDB002469 353/354 (99) UDB002469 591/594 (99)
Tylospora fibrillosa AF052563.1 405/408 (99) AJ0534922.1 561/578 (97)
Sebacina sp not detected   UDB000975 162/168 (96)
Lactarius sp 1 not detected   morphotyping only
ECM from Fagus sylvatica:     
Pezizales sp UDB002381 28/28 (100) DQ990873.1 602/646 (93)
Sebacinaceae sp EF619763.1 327/347 (94) EF195570.1 495/497 (99)
Laccaria amethystina UDB002418 356/360 (98) UDB002418 276/277 (99)
Endophyte AY268198.1 205/243 (84) not detected  
Inocybe napipes UDB000017 292/294 (99) UDB000017 148/155 (95)
Xerocomus pruinatus UDB000483 241/242 (99) UDB000483 279/288 (96)
Cortinarius sp 2 UDB002410 416/437 (95) UDB002410 227/239 (95)
Cortinarius sp 3 UDB002170 306/316 (96) UDB002445 57/59 (96)
Cortinarius tortuosus UDB002164 279/284 (98) not detected  
Russula puellaris UDB000010 313/315 (99) UDB000010 246/247 (99)
Tomentellopsis submollis UDB000198 272/273 (99) UDB000198 224/228 (98)
Laccaria laccata UDB000104 322/327 (98) UDB000769 283/283 (100)
Cenococcum geophilum not detected   UDB002297 216/222 (97)
Amanita rubescens not detected   morphotyping only
Lactarius sp 2 not detected   morphotyping only
Tomentella sp not detected   morphotyping only
  1. For the sequence homology search, BLASTN was carried out with the NCBI () and UNITE () databases. Accession numbers (Acc. n°) and identities are given.