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Table 3 Regions (REG) and single genes (SING) present in the S. Enteritidis PT4 P125109 chromosome and predicted by CGH analysis as absent or divergent in at least one S. Enteritidis isolate.

From: Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates

  ISOLATE DESIGNATION GENE RANGE HOMOLOGOUSa FUNCTION/GENE PREDICTION
REG 1 AF3353 SEN0910-SEN0912 No Part of SE10 prophage remnant.
REG 2# AF3353 SEN1394-SEN1395 No Part of SE14 prophage.
REG 3 9296/98 SEN1524-SEN1530 CT18, TY2, LT2, DT104, SL1344, SBG, SPA, SGAL Membrane, transport and hypothetical proteins
REG 4# 31/88, 8/89, 53/94, 206/99, AF3353 SEN1920-SEN1966 SDT104 Phage SE20
REG 5 AF3353 SEN1970-SEN1999 SGAL Genomic island ROD 21, coding to HNS
REG 6 31/88, 49/98, 92/05 (onlySEN2240) SEN2238-SEN2243 CT18, TY2, LT2, DT104, SL1344, SBG, SPA, SGAL CytochromeC synthesis, ferredoxin
REG 7 32/00, 31/88, 49/98 SEN2441-SEN2446 CT18, TY2, LT2, DT104, SL1344, SPA, SGAL Alcohol dehydrogenase, aldehyde dehydrogenase, ethanolamine utilization
REG 8 47/03 SEN2761-SEN2763 CT18, TY2, LT2, DT104, SL1344, SBG, SPA, SGAL rpoS, unknown
REG 9# AF3176, 47/03 (only SEN4286) SEN4286-SEN4291 SGAL ROD40, Type I Restriction Modification System Methyltransferase
SING 1 32/00 SEN2051 CT18, TY2, LT2, DT104, SL1344, SPA, SGAL pduS (ferredoxin)
SING 2 32/02 SEN2293 CT18, TY2, LT2, SL1344, SBG, SPA, SGAL Hypothetical Protein
SING 3 32/00 SEN2494 CT18, LT2, SL1344, DT104, SGAL ratB, lipoprotein
SING 4 47/03 SEN2819A CT18, TY2, DT104, SL1344, SPA, SGAL fucP, L-fucose permease
SING 5 47/03 SEN2841 CT18, TY2, LT2, DT104, SL1344, SBG, SPA, SGAL ppdB, prepilin peptidase dependent protein B precursor
SING 6 80/98 SEN2912 CT18, TY2, LT2, DT104, SL1344, SBG, SPA, SGAL pgk, phosphoglycerate kinase
SING 7 53/94 SEN3403 CT18, TY2, LT2, DT104, SL1344, SBG, SPA, SGAL Lipoprotein
SING 8 32/00 SEN3627 CT18, TY2, LT2, DT104, SL1344, SBG, SPA, SGAL yidR, putative ATP/GTP binding protein
SING 9 32/00 SEN3636 CT18, TY2, LT2, DT104, SL1344, SBG, SPA, SGAL yhjA, probable cytochromeC peroxidase
  1. a indicates when the REG or SING has homologous region described in other sequenced Salmonella serovars (see list of abbreviations). # indicates that the genetic region was previously described as variable among S. Enteritidis isolates [21].