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Table 1 Francisella strains resequenced in the study

From: Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay

S. No.

Isolate

Species/Subspecies

Cladea

Other strain name

Geographic Source

Year isolated

Source

1

SCHUS4

F. tularensis type A

A1 (A1a)

 

Ohio

1941

CDC

2

MA00-2987

F. tularensis type A

A1 (A1b)

 

Massachusetts

2000

CDC

3

AR01-1117

F. tularensis type A

A1 (A1b)

 

Arkansas

2001

CDC

4

KS00-1817

F. tularensis type A

A1 (A1a)

 

Kansas

2000

CDC

5

OK00-2732

F. tularensis type A

A1 (A1b)

 

Oklahoma

2000

CDC

6

FRAN005

F. tularensis type A

A1

 

Illinois

1990

USAMRIID

7

FRAN006

F. tularensis type A

A1

 

Illinois

1988

USAMRIID

8

FRAN007

F. tularensis type A

A1

 

Illinois

1988

USAMRIID

9

FRAN008

F. tularensis type A

A1

 

Illinois

1988

USAMRIID

10

FRAN009

F. tularensis type A

A1

 

Illinois

1988

USAMRIID

11

FRAN010

F. tularensis type A

A1

 

Illinois

1987

USAMRIID

12

FRAN011b

F. tularensis type A

A1

 

Illinois

1984

USAMRIID

13

FRAN014

F. tularensis type A

A1

 

Illinois

1989

USAMRIID

14

FRAN015

F. tularensis type A

A1

 

Illinois

1988

USAMRIID

15

FRAN023

F. tularensis type A

A1

FoxP1

Ohio

1940

USAMRIID

16

FRAN026

F. tularensis type A

A1

Schu-SOO

Unknown

Unknown

USAMRIID

17

FRAN030

F. tularensis type A

A1

SOL

Unknown

Unknown

USAMRIID

18

FRAN031

F. tularensis type A

A1

SCHERM

Ohio

1944

USAMRIID

19

FRAN032

F. tularensis type A

A1

GREU

Ohio

Unknown

USAMRIID

20

FRAN033

F. tularensis type A

A1

HUGH

Ohio

1940

USAMRIID

21

WY96-3418

F. tularensis type A

A2

 

Wyoming

1996

CDC

22

CA02-0099

F. tularensis type A

A2

 

California

2002

CDC

23

UT02-1927

F. tularensis type A

A2

 

Utah

2002

CDC

24

FRAN001

F. tularensis type A

A2

38 derivative (ATCC 6223)

Utah

1920 (?)

USAMRIID

25

FRAN027

F. tularensis type A

A2

38A (38 derivative)

Utah

-

USAMRIID

26

FRAN028

F. tularensis type A

A2

Larsen NIH38 (38 derivative)

Utah

-

USAMRIID

27

LVS

F. tularensis type B

  

Russia

1958 (?)

CDC

28

KY99-3387

F. tularensis type B

  

Kentucky

1999

CDC

29

OR96-0246

F. tularensis type B

  

Oregon

1996

CDC

30

OR96-0463

F. tularensis type B

  

Oregon

1996

CDC

31

KY00-1708

F. tularensis type B

  

Kentucky

2000

CDC

32

MO01-1673

F. tularensis type B

  

Missouri

2001

CDC

33

IN00-2758

F. tularensis type B

  

Indiana

2000

CDC

34

CA99-3992

F. tularensis type B

  

California

1999

CDC

35

FRAN004

F. tularensis type B

 

LVS

Russia

1958 (?)

USAMRIID

36

FRAN012

F. tularensis type B

  

Alabama

1991

USAMRIID

37

FRAN024

F. tularensis type B

 

JAP

Japan

1926

USAMRIID

38

FRAN025

F. tularensis type B

 

VT68

Vermont

1968

USAMRIID

39

FRAN029

F. tularensis type B

 

425

Montana

1941 (?)

USAMRIID

40

FRAN003

F. novicida

 

ATCC 15482 (U112)

Utah

1950

USAMRIID

  1. aStrains characterized to the level of A1a or A1b by PmeI PFGE are indicated.
  2. bIsolate recovered from a clinically normal rabbit