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Table 1 Francisella strains resequenced in the study

From: Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay

S. No. Isolate Species/Subspecies Cladea Other strain name Geographic Source Year isolated Source
1 SCHUS4 F. tularensis type A A1 (A1a)   Ohio 1941 CDC
2 MA00-2987 F. tularensis type A A1 (A1b)   Massachusetts 2000 CDC
3 AR01-1117 F. tularensis type A A1 (A1b)   Arkansas 2001 CDC
4 KS00-1817 F. tularensis type A A1 (A1a)   Kansas 2000 CDC
5 OK00-2732 F. tularensis type A A1 (A1b)   Oklahoma 2000 CDC
6 FRAN005 F. tularensis type A A1   Illinois 1990 USAMRIID
7 FRAN006 F. tularensis type A A1   Illinois 1988 USAMRIID
8 FRAN007 F. tularensis type A A1   Illinois 1988 USAMRIID
9 FRAN008 F. tularensis type A A1   Illinois 1988 USAMRIID
10 FRAN009 F. tularensis type A A1   Illinois 1988 USAMRIID
11 FRAN010 F. tularensis type A A1   Illinois 1987 USAMRIID
12 FRAN011b F. tularensis type A A1   Illinois 1984 USAMRIID
13 FRAN014 F. tularensis type A A1   Illinois 1989 USAMRIID
14 FRAN015 F. tularensis type A A1   Illinois 1988 USAMRIID
15 FRAN023 F. tularensis type A A1 FoxP1 Ohio 1940 USAMRIID
16 FRAN026 F. tularensis type A A1 Schu-SOO Unknown Unknown USAMRIID
17 FRAN030 F. tularensis type A A1 SOL Unknown Unknown USAMRIID
18 FRAN031 F. tularensis type A A1 SCHERM Ohio 1944 USAMRIID
19 FRAN032 F. tularensis type A A1 GREU Ohio Unknown USAMRIID
20 FRAN033 F. tularensis type A A1 HUGH Ohio 1940 USAMRIID
21 WY96-3418 F. tularensis type A A2   Wyoming 1996 CDC
22 CA02-0099 F. tularensis type A A2   California 2002 CDC
23 UT02-1927 F. tularensis type A A2   Utah 2002 CDC
24 FRAN001 F. tularensis type A A2 38 derivative (ATCC 6223) Utah 1920 (?) USAMRIID
25 FRAN027 F. tularensis type A A2 38A (38 derivative) Utah - USAMRIID
26 FRAN028 F. tularensis type A A2 Larsen NIH38 (38 derivative) Utah - USAMRIID
27 LVS F. tularensis type B    Russia 1958 (?) CDC
28 KY99-3387 F. tularensis type B    Kentucky 1999 CDC
29 OR96-0246 F. tularensis type B    Oregon 1996 CDC
30 OR96-0463 F. tularensis type B    Oregon 1996 CDC
31 KY00-1708 F. tularensis type B    Kentucky 2000 CDC
32 MO01-1673 F. tularensis type B    Missouri 2001 CDC
33 IN00-2758 F. tularensis type B    Indiana 2000 CDC
34 CA99-3992 F. tularensis type B    California 1999 CDC
35 FRAN004 F. tularensis type B   LVS Russia 1958 (?) USAMRIID
36 FRAN012 F. tularensis type B    Alabama 1991 USAMRIID
37 FRAN024 F. tularensis type B   JAP Japan 1926 USAMRIID
38 FRAN025 F. tularensis type B   VT68 Vermont 1968 USAMRIID
39 FRAN029 F. tularensis type B   425 Montana 1941 (?) USAMRIID
40 FRAN003 F. novicida   ATCC 15482 (U112) Utah 1950 USAMRIID
  1. aStrains characterized to the level of A1a or A1b by PmeI PFGE are indicated.
  2. bIsolate recovered from a clinically normal rabbit