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Table 2 Summary of new genes

From: Identification of new genes in Sinorhizobium melilotiusing the Genome Sequencer FLX system

Gene Replicon* Predicted start Predicted end Strand Length Co-transcribed with upstream gene Co-transcribed with downstream gene Target description for predicted genes E-value Percent similarity
VBISMa0080 A 65258 65494 - 237 SMa0121 - - - -
VBISMa0492 A 410418 410660 + 243 - - - - -
VBISMa1337 A 1191271 1191525 - 255 - - putative dioxygenase, slightly similar to catechol 1,2-dioxygenase protein [S. meliloti 1021] 2e-4 25
VBISMb0078 B 66440 66619 + 180 - SMb20056 hypothetical protein BMEII0534 [B. melitensis 16M] 4e-3 30
VBISMb0839 B 679069 679800 + 732 - - two component transcriptional regulator, LuxR family [S. medicae WSM419] 2e-68 69
VBISMc0095 C 83906 84025 + 120 tRNA-Ala 23s rRNA - - -
VBISMc0802 C 662922 663287 + 366 - - - - -
VBISMc1000 C 815598 816023 + 426 - - hypothetical protein Smed_0338 [S. medicae WSM419] 6e-20 36
VBISMc1221 C 997383 997565 + 183 ctaE SMc00014 hypothetical protein Smed_0524 [S. medicae WSM419] 1e-15 63
VBISMc1492 C 1208848 1209090 - 243 - - - - -
VBISMc1793 C 1444596 1444832 - 237 - rne - - -
VBISMc2171 C 1725819 1726607 - 789 - SMc01204 hypothetical protein Smed_1270 [S. medicae WSM419] 8e-124 89
VBISMc2174 C 1728081 1728221 - 141 SMc01200 SMc01202 - - -
VBISMc2596 C 2060940 2061143 + 204 - csp4 - - -
VBISMc2940 C 2312866 2313225 - 360 - - conserved hypothetical signal peptide protein [S. medicae WSM419] 2e-54 89
VBISMc2955 C 2321074 2321289 + 216 - - - - -
VBISMc3188 C 2520862 2520993 - 132 - - - - -
VBISMc3282 C 2595016 2595537 + 522 - SMc01535 Nodulation protein nolR 9e-50 59
VBISMc4046 C 3233965 3234153 + 189 SMc03108 - hypothetical protein pRL110117 [R. leguminosarum bv. viciae 3841] 1e-5 56
VBISMc4289 C 3417257 3419215 - 1959 - - hypothetical protein Cvib_0070 [P. vibrioformis DSM 265] 4e-35 47
  1. *: replicon A: pSymA; B: pSymB; C: Chromosome.