From: Fluorescent-BOX-PCR for resolving bacterial genetic diversity, endemism and biogeography
Strain | Agarose gel | HEX-F-BOX | 6-FAM-F-BOX | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | DNA extraction | PCR | Gel | Overall | DNA extraction | PCR | Injection | Overall | DNA extraction | PCR | Injection | Overall |
B. cereus BC360 | 0.822 | 0.554 | 0.651 | 0.300 | 0.985 | 0.985 | 1.000 | 0.971 | 1.000 | 1.000 | 1.000 | 1.000 |
CI1-23 | n.d.a | 0.906 | 0.906 | 0.812 | n.d. | n.d. | n.d. | n.d. | n.d. | 0.972 | 0.972 | 0.972 |
CI2-13 | 0.864 | 0.952 | 0.952 | 0.818 | n.d. | 0.838 | 0.983 | 0.823 | 0.970 | 0.994 | 0.994 | 0.951 |
CI2-17 | n.d. | 0.624 | 0.811 | 0.500 | n.d. | 0.944 | 0.981 | 0.926 | n.d. | 0.961 | 0.980 | 0.942 |
CI2-23 | 0.907 | 0.905 | 0.864 | 0.727 | 0.961 | 0.983 | 0.994 | 0.933 | 0.969 | 0.969 | 1.000 | 0.939 |
CO2-33 | n.d. | 0.830 | 0.826 | 0.750 | n.d. | n.d. | n.d. | n.d. | n.d. | 0.978 | 1.000 | 0.978 |
DS3 | 0.791 | 0.597 | 0.803 | 0.375 | 0.971 | 0.971 | 0.990 | 0.923 | 0.919 | 0.979 | 0.992 | 0.950 |
E. coli DSM50902 | 0.927 | 0.874 | 0.879 | 0.737 | 0.979 | 0.964 | 0.993 | 0.943 | 0.919 | 0.977 | 0.992 | 0.882 |
Average | 0.862 | 0.780 | 0.837 | 0.627 | 0.974 | 0.948 | 0.990 | 0.920 | 0.955 | 0.979 | 0.991 | 0.952 |
Std. Deviation | 0.057 | 0.161 | 0.090 | 0.205 | 0.010 | 0.056 | 0.007 | 0.051 | 0.035 | 0.013 | 0.010 | 0.035 |